Zinc in PDB 8gqd: Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus

All present enzymatic activity of Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus:
2.7.14.1;

The binding sites of Zinc atom in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus (pdb code 8gqd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus, PDB code: 8gqd:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn201 b:99.5 occ:1.00 SG E:CYS87 1.7 84.7 1.0 SG E:CYS108 2.7 79.3 1.0 SG E:CYS105 2.9 75.8 1.0 CB E:CYS87 3.2 84.7 1.0 N E:CYS108 3.4 79.3 1.0 SG E:CYS90 3.6 80.9 1.0 CB E:CYS108 3.6 79.3 1.0 CB E:CYS90 3.6 80.9 1.0 N E:CYS90 3.7 80.9 1.0 CA E:CYS108 3.8 79.3 1.0 CB E:ASN107 3.9 76.2 1.0 C E:ASN107 4.1 76.2 1.0 CA E:CYS90 4.3 80.9 1.0 CB E:SER89 4.4 79.1 1.0 N E:SER89 4.4 79.1 1.0 N E:CYS105 4.4 75.8 1.0 CB E:CYS105 4.4 75.8 1.0 CA E:CYS87 4.5 84.7 1.0 CA E:ASN107 4.5 76.2 1.0 C E:SER89 4.6 79.1 1.0 CA E:SER89 4.7 79.1 1.0 N E:ASN107 4.8 76.2 1.0 OD1 E:ASN107 4.8 76.2 1.0 CD E:PRO88 4.9 79.7 1.0 CA E:CYS105 4.9 75.8 1.0 N E:PRO88 4.9 79.7 1.0 O E:ASN107 4.9 76.2 1.0 C E:CYS87 4.9 84.7 1.0 CG E:ASN107 4.9 76.2 1.0 O E:CYS105 5.0 75.8 1.0

Zinc binding site 2 out of 4 in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn201 b:100.2 occ:1.00 SG F:CYS87 2.5 84.9 1.0 SG F:CYS105 2.5 74.6 1.0 SG F:CYS90 2.7 80.3 1.0 SG F:CYS108 2.9 77.9 1.0 CB F:CYS90 3.1 80.3 1.0 N F:CYS90 3.4 80.3 1.0 CB F:CYS87 3.8 84.9 1.0 CB F:CYS105 3.8 74.6 1.0 N F:CYS105 3.8 74.6 1.0 N F:CYS108 3.9 77.9 1.0 CA F:CYS90 3.9 80.3 1.0 CB F:CYS108 3.9 77.9 1.0 CB F:SER89 4.2 78.1 1.0 C F:GLY104 4.3 77.8 1.0 CA F:CYS108 4.3 77.9 1.0 CA F:CYS105 4.3 74.6 1.0 CB F:ASN107 4.4 76.0 1.0 C F:SER89 4.4 78.1 1.0 CA F:GLY104 4.5 77.8 1.0 N F:SER89 4.7 78.1 1.0 CA F:SER89 4.7 78.1 1.0 C F:ASN107 4.7 76.0 1.0 C F:CYS105 4.8 74.6 1.0 O F:CYS105 4.9 74.6 1.0 OD1 F:ASN107 4.9 76.0 1.0 CA F:ASN107 5.0 76.0 1.0 N F:ASN107 5.0 76.0 1.0

Zinc binding site 3 out of 4 in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:98.6 occ:1.00 SG G:CYS90 2.4 79.2 1.0 SG G:CYS105 2.5 71.7 1.0 SG G:CYS87 2.7 85.2 1.0 CB G:CYS90 2.9 79.2 1.0 SG G:CYS108 3.1 77.3 1.0 N G:CYS90 3.2 79.2 1.0 CA G:CYS90 3.7 79.2 1.0 CB G:CYS105 3.7 71.7 1.0 N G:CYS105 3.9 71.7 1.0 CB G:CYS87 4.0 85.2 1.0 CB G:SER89 4.1 75.9 1.0 N G:CYS108 4.2 77.3 1.0 CB G:CYS108 4.2 77.3 1.0 C G:SER89 4.2 75.9 1.0 C G:GLY104 4.2 74.6 1.0 CA G:CYS105 4.3 71.7 1.0 CA G:GLY104 4.5 74.6 1.0 CA G:SER89 4.5 75.9 1.0 CB G:ASN107 4.6 75.0 1.0 N G:SER89 4.6 75.9 1.0 CA G:CYS108 4.7 77.3 1.0 C G:CYS105 4.9 71.7 1.0 C G:CYS90 4.9 79.2 1.0 O G:GLY104 4.9 74.6 1.0 OD1 G:ASN107 5.0 75.0 1.0 OG G:SER89 5.0 75.9 1.0

Zinc binding site 4 out of 4 in the Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Complex Structure of Arginine Kinase Mcsb and Mcsa From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn201 b:107.4 occ:1.00 SG H:CYS90 2.4 83.4 1.0 SG H:CYS87 2.5 87.9 1.0 SG H:CYS105 2.7 73.7 1.0 CB H:CYS90 2.8 83.4 1.0 N H:CYS90 3.0 83.4 1.0 SG H:CYS108 3.2 79.1 1.0 CA H:CYS90 3.5 83.4 1.0 CB H:CYS87 3.8 87.9 1.0 CB H:CYS105 4.0 73.7 1.0 CB H:SER89 4.0 79.4 1.0 C H:SER89 4.1 79.4 1.0 N H:CYS105 4.1 73.7 1.0 N H:CYS108 4.3 79.1 1.0 CB H:CYS108 4.3 79.1 1.0 CA H:SER89 4.4 79.4 1.0 C H:GLY104 4.5 77.5 1.0 N H:SER89 4.5 79.4 1.0 CA H:CYS105 4.6 73.7 1.0 CA H:GLY104 4.6 77.5 1.0 CB H:ASN107 4.7 77.4 1.0 C H:CYS90 4.7 83.4 1.0 CA H:CYS108 4.7 79.1 1.0 N H:HIS91 4.9 87.4 1.0 OG H:SER89 4.9 79.4 1.0

K.Lu, B.Luo, X.Tao, H.Li, Y.Xie, Z.Zhao, W.Xia, Z.Su, Z.Mao. Complex Structure and Activation Mechanism of Arginine Kinase Mcsb By Mcsa To Be Published.