Zinc in PDB 8ev3: YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B

All present enzymatic activity of YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B:
3.6.4.13;

The binding sites of Zinc atom in the YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B (pdb code 8ev3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B, PDB code: 8ev3:

Zinc binding site 1 out of 1 in the YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of YTM1 Associated 60S Nascent Ribosome (-FKBP39) State 1B within 5.0Å range: probe atom residue distance (Å) B Occ j:Zn101 b:31.6 occ:1.00 SG j:CYS19 2.3 25.0 1.0 SG j:CYS37 2.3 31.3 1.0 SG j:CYS22 2.3 25.2 1.0 SG j:CYS34 2.3 17.4 1.0 CB j:CYS19 3.0 19.2 1.0 CB j:CYS34 3.1 20.3 1.0 CB j:CYS37 3.4 19.7 1.0 CB j:CYS22 3.6 15.2 1.0 N j:CYS37 3.8 19.0 1.0 N j:CYS22 3.9 15.6 1.0 CA j:CYS37 4.1 20.4 1.0 CB j:TYR39 4.2 12.7 1.0 CA j:CYS22 4.3 17.2 1.0 CA j:CYS19 4.5 15.8 1.0 CA j:CYS34 4.5 20.3 1.0 CB j:ARG21 4.6 12.6 1.0 CB j:CYS36 4.7 19.3 1.0 C j:CYS37 4.7 19.7 1.0 N j:TYR39 4.7 16.8 1.0 N j:GLY38 4.8 19.1 1.0 C j:CYS36 4.9 16.6 1.0 C j:ARG21 4.9 16.6 1.0 N j:ARG21 5.0 16.2 1.0

I.Ugolini, S.Bilokapic, M.Ferrolino, J.Teague, Y.Yan, X.Zhou, A.Deshmukh, M.White, R.W.Kriwacki, M.Halic. Chromatin Localization of Nucleophosmin Organizes Ribosome Biogenesis. Mol.Cell V. 82 4443 2022.
ISSN: ISSN 1097-2765
PubMed: 36423630
DOI: 10.1016/J.MOLCEL.2022.10.033