Zinc in PDB 8dh6: Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

Enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

All present enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs:
7.1.1.9;

Other elements in 8dh6:

The structure of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Copper (Cu) 2 atoms
Calcium (Ca) 1 atom
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs (pdb code 8dh6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs, PDB code: 8dh6:

Zinc binding site 1 out of 1 in 8dh6

Go back to Zinc Binding Sites List in 8dh6
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Zn201

b:73.0
occ:1.00
NE2 d:HIS119 2.1 60.3 1.0
SG d:CYS134 2.3 61.2 1.0
SG d:CYS137 2.3 60.1 1.0
SG d:CYS111 2.3 61.5 1.0
CE1 d:HIS119 2.7 60.3 1.0
CB d:CYS134 3.0 61.2 1.0
CD2 d:HIS119 3.3 60.3 1.0
CB d:CYS137 3.4 60.1 1.0
N d:CYS137 3.9 60.1 1.0
CB d:CYS111 3.9 61.5 1.0
ND1 d:HIS119 3.9 60.3 1.0
O d:CYS111 4.2 61.5 1.0
CA d:CYS137 4.2 60.1 1.0
CG d:HIS119 4.2 60.3 1.0
C d:CYS111 4.3 61.5 1.0
N d:GLY113 4.3 62.5 1.0
CB d:MET122 4.4 60.4 1.0
CA d:CYS134 4.5 61.2 1.0
N d:THR112 4.6 61.9 1.0
C d:THR112 4.7 61.9 1.0
CA d:GLY113 4.7 62.5 1.0
OG d:SER139 4.7 60.2 1.0
CA d:CYS111 4.7 61.5 1.0
CB d:GLU136 4.9 61.2 1.0
C d:GLU136 4.9 61.2 1.0
CA d:THR112 4.9 61.9 1.0
CG d:MET122 4.9 60.4 1.0
C d:CYS137 4.9 60.1 1.0

Reference:

A.S.Godoy, Y.Song, H.Cheruvara, A.Quigley, G.Oliva. Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs To Be Published.
Page generated: Sat Apr 8 08:13:39 2023

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