Zinc in PDB 8cg9: Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor

Enzymatic activity of Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor

All present enzymatic activity of Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor, PDB code: 8cg9 was solved by J.A.Newman, Y.Yosaatmadja, H.T.Baddock, M.Bielinski, F.Von Delft, C.Bountra, P.J.Mchugh, C.J.Schofield, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.08 / 1.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.522, 57.148, 113.903, 90, 90, 90
R / Rfree (%) 22.3 / 23.1

Other elements in 8cg9:

The structure of Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor (pdb code 8cg9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor, PDB code: 8cg9:

Zinc binding site 1 out of 1 in 8cg9

Go back to Zinc Binding Sites List in 8cg9
Zinc binding site 1 out of 1 in the Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1104

b:28.8
occ:1.00
 NE2 A:HIS737 2.0 30.0 1.0
O A:HOH1234 2.1 23.2 1.0
O23 A:XOB1102 2.1 35.5 1.0
O23 A:R3Z1103 2.2 23.3 1.0
OD2 A:ASP815 2.2 21.4 1.0
O19 A:XOB1102 2.3 34.3 1.0
N20 A:XOB1102 3.0 33.5 1.0
N20 A:R3Z1103 3.0 29.8 1.0
C18 A:XOB1102 3.0 37.3 1.0
CD2 A:HIS737 3.0 30.3 1.0
CE1 A:HIS737 3.0 29.7 1.0
CG A:ASP815 3.1 24.8 1.0
OD1 A:ASP815 3.3 24.8 1.0
NI A:NI1101 3.3 21.1 1.0
O19 A:R3Z1103 3.6 27.3 1.0
C18 A:R3Z1103 3.6 30.5 1.0
O A:HOH1309 3.8 38.1 1.0
C21 A:R3Z1103 3.8 33.9 1.0
O A:HOH1270 3.9 33.4 1.0
O22 A:R3Z1103 4.0 28.6 1.0
ND1 A:HIS737 4.1 25.1 1.0
CG A:HIS737 4.2 30.0 1.0
CE1 A:HIS994 4.3 22.6 1.0
C21 A:XOB1102 4.3 38.8 1.0
NE2 A:HIS732 4.3 23.7 1.0
C17 A:XOB1102 4.4 41.3 1.0
NE2 A:HIS994 4.5 22.9 1.0
CB A:ASP815 4.5 20.1 1.0
CE1 A:HIS732 4.5 21.2 1.0
CB A:ASP736 4.6 36.6 1.0
OD2 A:ASP736 4.6 45.3 1.0
O22 A:XOB1102 4.8 36.9 1.0
C17 A:R3Z1103 4.8 34.4 1.0
ND1 A:HIS734 4.9 22.0 1.0
N12 A:R3Z1103 4.9 37.5 1.0
NE2 A:HIS793 5.0 20.7 1.0

Reference:

J.A.Newman, Y.Yosaatmadja, H.T.Baddock, M.Bielinski, F.Von Delft, C.Bountra, P.J.Mchugh, C.J.Schofield, O.Gileadi. Crystal Structure of Human Dna Cross-Link Repair 1A in Complex with A Cyclic N-Hydroxyurea Inhibitor To Be Published.
Page generated: Wed Oct 30 18:44:07 2024

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