Zinc in PDB 8ca3: Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2).

All present enzymatic activity of Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2).:
7.1.1.2;

The structure of Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2). also contains other interesting chemical elements:

Iron

(Fe)

28 atoms

The binding sites of Zinc atom in the Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2). (pdb code 8ca3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2)., PDB code: 8ca3:

Zinc binding site 1 out of 1 in the Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2). within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn201 b:71.3 occ:1.00 NE2 R:HIS68 2.0 14.1 1.0 SG R:CYS84 2.2 28.1 1.0 SG R:CYS87 2.3 47.5 1.0 SG R:CYS59 2.4 37.5 1.0 CE1 R:HIS68 2.8 14.1 1.0 O R:ASP60 3.1 33.3 1.0 CD2 R:HIS68 3.2 22.0 1.0 CB R:CYS84 3.2 29.2 1.0 CB R:CYS87 3.4 33.4 1.0 CB R:CYS59 3.6 25.0 1.0 N R:CYS87 3.8 35.0 1.0 ND1 R:HIS68 4.0 12.2 1.0 C R:ASP60 4.0 29.6 1.0 CA R:CYS87 4.2 33.9 1.0 CG R:HIS68 4.2 18.1 1.0 C R:CYS59 4.4 24.6 1.0 CB R:TYR86 4.6 23.6 1.0 O R:CYS59 4.6 30.2 1.0 CA R:CYS59 4.6 21.6 1.0 N R:ASP60 4.6 26.3 1.0 CA R:CYS84 4.6 28.3 1.0 CA R:ASP60 4.7 15.5 1.0 N R:GLY61 4.8 36.2 1.0 C R:TYR86 4.8 27.7 1.0 N R:TYR86 4.9 17.9 1.0 CA R:GLY61 4.9 35.9 1.0 C R:CYS87 4.9 35.1 1.0 N R:GLY88 4.9 38.0 1.0 CA R:TYR86 5.0 17.1 1.0

Z.Yin, A.N.A.Agip, H.Bridges, J.Hirst. Cryo-Em Structure NDUFS4 Knockout Complex I From Mus Musculus Heart (Class 2). To Be Published 2023.
DOI: 10.1038/S44318-023-00001-4