Zinc in PDB 8bed: Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip)

All present enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip):
7.1.1.2;

The structure of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip) also contains other interesting chemical elements:

Iron

(Fe)

16 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip) (pdb code 8bed). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip), PDB code: 8bed:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Arabidopsis Thaliana I+III2 Supercomplex (Ci Peripheral Tip) within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn200 b:1.1 occ:1.00 NE2 R:HIS82 2.1 1.6 1.0 SG R:CYS100 2.3 0.0 1.0 SG R:CYS97 2.3 0.0 1.0 SG R:CYS72 2.3 5.7 1.0 CE1 R:HIS82 2.9 0.0 1.0 CD2 R:HIS82 3.2 0.0 1.0 CB R:CYS97 3.4 1.5 1.0 CB R:CYS72 3.5 0.0 1.0 CB R:CYS100 3.5 0.0 1.0 N R:CYS100 3.9 0.0 1.0 N R:GLY74 3.9 0.0 1.0 CA R:GLY74 4.0 3.1 1.0 ND1 R:HIS82 4.0 0.0 1.0 CG R:HIS82 4.2 0.0 1.0 CA R:CYS100 4.2 1.2 1.0 C R:CYS72 4.3 0.0 1.0 O R:CYS72 4.5 0.0 1.0 CB R:TYR99 4.5 0.0 1.0 CA R:CYS72 4.5 0.0 1.0 N R:GLU73 4.6 0.0 1.0 C R:GLU73 4.6 0.0 1.0 CA R:CYS97 4.8 0.0 1.0 CB R:LEU102 4.8 0.0 1.0 O R:HOH340 4.8 2.6 1.0 C R:CYS100 4.9 0.0 1.0 C R:TYR99 4.9 0.0 1.0 OH R:TYR104 4.9 0.0 1.0 N R:GLY101 5.0 0.0 1.0

N.Klusch, M.Dreimann, J.Senkler, N.Rugen, W.Kuhlbrandt, H.P.Braun. Cryo-Em Structure of the Respiratory I + III 2 Supercomplex From Arabidopsis Thaliana at 2 Angstrom Resolution. Nat.Plants 2022.
ISSN: ESSN 2055-0278
PubMed: 36585502
DOI: 10.1038/S41477-022-01308-6