Zinc in PDB 8b3f: Pol II-Csb-Csa-DDB1-ELOF1
Enzymatic activity of Pol II-Csb-Csa-DDB1-ELOF1
All present enzymatic activity of Pol II-Csb-Csa-DDB1-ELOF1:
2.7.7.6;
Other elements in 8b3f:
The structure of Pol II-Csb-Csa-DDB1-ELOF1 also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Pol II-Csb-Csa-DDB1-ELOF1
(pdb code 8b3f). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the
Pol II-Csb-Csa-DDB1-ELOF1, PDB code: 8b3f:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Zinc binding site 1 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 1 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2001
b:40.3
occ:1.00
|
NE2
|
A:HIS84
|
2.1
|
11.9
|
1.0
|
|
SG
|
A:CYS74
|
2.3
|
19.3
|
1.0
|
|
SG
|
A:CYS81
|
2.3
|
14.6
|
1.0
|
|
SG
|
A:CYS71
|
2.3
|
22.3
|
1.0
|
|
HD2
|
A:HIS84
|
2.5
|
11.9
|
1.0
|
|
CD2
|
A:HIS84
|
2.6
|
11.9
|
1.0
|
|
HA2
|
A:GLY63
|
2.9
|
17.0
|
1.0
|
|
HB3
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
HB2
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
CB
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
H
|
A:CYS74
|
3.3
|
19.3
|
1.0
|
|
CE1
|
A:HIS84
|
3.3
|
11.9
|
1.0
|
|
HB
|
A:THR73
|
3.6
|
18.7
|
1.0
|
|
CB
|
A:CYS81
|
3.7
|
14.6
|
1.0
|
|
HB2
|
A:CYS81
|
3.7
|
14.6
|
1.0
|
|
O
|
A:PRO82
|
3.7
|
11.0
|
1.0
|
|
HE1
|
A:HIS84
|
3.7
|
11.9
|
1.0
|
|
CB
|
A:CYS74
|
3.8
|
19.3
|
1.0
|
|
CG
|
A:HIS84
|
3.9
|
11.9
|
1.0
|
|
CA
|
A:GLY63
|
3.9
|
17.0
|
1.0
|
|
HB3
|
A:CYS74
|
4.0
|
19.3
|
1.0
|
|
N
|
A:CYS74
|
4.1
|
19.3
|
1.0
|
|
ND1
|
A:HIS84
|
4.2
|
11.9
|
1.0
|
|
HA
|
A:CYS81
|
4.2
|
14.6
|
1.0
|
|
H
|
A:THR73
|
4.3
|
18.7
|
1.0
|
|
H
|
A:GLY76
|
4.4
|
19.2
|
1.0
|
|
HA3
|
A:GLY63
|
4.4
|
17.0
|
1.0
|
|
HD2
|
A:PRO82
|
4.4
|
11.0
|
1.0
|
|
HB3
|
A:CYS81
|
4.4
|
14.6
|
1.0
|
|
N
|
A:GLY63
|
4.4
|
17.0
|
1.0
|
|
CA
|
A:CYS81
|
4.4
|
14.6
|
1.0
|
|
HG23
|
A:VAL64
|
4.5
|
19.9
|
1.0
|
|
HB2
|
A:CYS74
|
4.5
|
19.3
|
1.0
|
|
CA
|
A:CYS74
|
4.5
|
19.3
|
1.0
|
|
H
|
A:GLY63
|
4.5
|
17.0
|
1.0
|
|
CB
|
A:THR73
|
4.6
|
18.7
|
1.0
|
|
CA
|
A:CYS71
|
4.6
|
22.3
|
1.0
|
|
C
|
A:GLY63
|
4.7
|
17.0
|
1.0
|
|
HA2
|
A:GLY83
|
4.7
|
12.2
|
1.0
|
|
C
|
A:PRO82
|
4.7
|
11.0
|
1.0
|
|
C
|
A:CYS81
|
4.7
|
14.6
|
1.0
|
|
H
|
A:ALA75
|
4.8
|
22.6
|
1.0
|
|
HG22
|
A:VAL64
|
4.8
|
19.9
|
1.0
|
|
HA
|
A:CYS71
|
4.9
|
22.3
|
1.0
|
|
H
|
A:HIS84
|
4.9
|
11.9
|
1.0
|
|
N
|
A:PRO82
|
5.0
|
11.0
|
1.0
|
|
HG1
|
A:THR73
|
5.0
|
18.7
|
1.0
|
|
Zinc binding site 2 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 2 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2002
b:51.9
occ:1.00
|
HG
|
A:CYS114
|
1.9
|
30.6
|
1.0
|
|
SG
|
A:CYS111
|
2.3
|
31.8
|
1.0
|
|
SG
|
A:CYS184
|
2.3
|
35.0
|
1.0
|
|
SG
|
A:CYS154
|
2.3
|
35.1
|
1.0
|
|
SG
|
A:CYS114
|
2.3
|
30.6
|
1.0
|
|
HB2
|
A:CYS154
|
2.4
|
35.1
|
1.0
|
|
CB
|
A:CYS154
|
2.6
|
35.1
|
1.0
|
|
H
|
A:CYS184
|
2.7
|
35.0
|
1.0
|
|
HB3
|
A:CYS154
|
2.7
|
35.1
|
1.0
|
|
H
|
A:CYS114
|
2.8
|
30.6
|
1.0
|
|
HB2
|
A:CYS111
|
3.3
|
31.8
|
1.0
|
|
CB
|
A:CYS111
|
3.3
|
31.8
|
1.0
|
|
N
|
A:CYS184
|
3.5
|
35.0
|
1.0
|
|
HB3
|
A:CYS111
|
3.5
|
31.8
|
1.0
|
|
CB
|
A:CYS184
|
3.6
|
35.0
|
1.0
|
|
HB3
|
A:CYS184
|
3.6
|
35.0
|
1.0
|
|
HB2
|
A:PHE113
|
3.6
|
31.0
|
1.0
|
|
N
|
A:CYS114
|
3.6
|
30.6
|
1.0
|
|
CB
|
A:CYS114
|
3.7
|
30.6
|
1.0
|
|
HB3
|
A:CYS114
|
3.9
|
30.6
|
1.0
|
|
H
|
A:PHE113
|
4.0
|
31.0
|
1.0
|
|
CA
|
A:CYS184
|
4.1
|
35.0
|
1.0
|
|
CA
|
A:CYS154
|
4.1
|
35.1
|
1.0
|
|
HD2
|
A:PHE113
|
4.2
|
31.0
|
1.0
|
|
CA
|
A:CYS114
|
4.2
|
30.6
|
1.0
|
|
H
|
A:GLY185
|
4.3
|
32.4
|
1.0
|
|
H
|
A:ARG186
|
4.3
|
33.5
|
1.0
|
|
HB2
|
A:CYS114
|
4.3
|
30.6
|
1.0
|
|
HB2
|
A:CYS184
|
4.3
|
35.0
|
1.0
|
|
HA2
|
A:GLY183
|
4.4
|
31.4
|
1.0
|
|
HA
|
A:CYS154
|
4.4
|
35.1
|
1.0
|
|
HE22
|
A:GLN188
|
4.4
|
32.8
|
1.0
|
|
HA3
|
A:GLY183
|
4.5
|
31.4
|
1.0
|
|
HB2
|
A:ARG186
|
4.6
|
33.5
|
1.0
|
|
CB
|
A:PHE113
|
4.6
|
31.0
|
1.0
|
|
C
|
A:GLY183
|
4.6
|
31.4
|
1.0
|
|
H
|
A:SER115
|
4.6
|
28.7
|
1.0
|
|
N
|
A:GLY185
|
4.7
|
32.4
|
1.0
|
|
C
|
A:PHE113
|
4.7
|
31.0
|
1.0
|
|
N
|
A:PHE113
|
4.7
|
31.0
|
1.0
|
|
H
|
A:CYS154
|
4.7
|
35.1
|
1.0
|
|
CA
|
A:CYS111
|
4.7
|
31.8
|
1.0
|
|
CA
|
A:GLY183
|
4.7
|
31.4
|
1.0
|
|
C
|
A:CYS184
|
4.8
|
35.0
|
1.0
|
|
H
|
A:LYS116
|
4.9
|
32.9
|
1.0
|
|
HA
|
A:CYS111
|
4.9
|
31.8
|
1.0
|
|
C
|
A:CYS114
|
4.9
|
30.6
|
1.0
|
|
CA
|
A:PHE113
|
4.9
|
31.0
|
1.0
|
|
NE2
|
A:GLN188
|
4.9
|
32.8
|
1.0
|
|
HA
|
A:CYS184
|
4.9
|
35.0
|
1.0
|
|
C
|
A:CYS154
|
4.9
|
35.1
|
1.0
|
|
N
|
A:CYS154
|
4.9
|
35.1
|
1.0
|
|
N
|
A:SER115
|
5.0
|
28.7
|
1.0
|
|
Zinc binding site 3 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 3 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1201
b:53.4
occ:1.00
|
SG
|
B:CYS1122
|
2.3
|
16.2
|
1.0
|
|
SG
|
B:CYS1140
|
2.3
|
25.7
|
1.0
|
|
SG
|
B:CYS1119
|
2.3
|
15.9
|
1.0
|
|
SG
|
B:CYS1137
|
2.3
|
20.1
|
1.0
|
|
HB3
|
B:CYS1119
|
2.8
|
15.9
|
1.0
|
|
HB2
|
B:CYS1140
|
2.9
|
25.7
|
1.0
|
|
CB
|
B:CYS1119
|
2.9
|
15.9
|
1.0
|
|
HB2
|
B:CYS1119
|
3.0
|
15.9
|
1.0
|
|
H
|
B:CYS1140
|
3.1
|
25.7
|
1.0
|
|
H
|
B:CYS1122
|
3.1
|
16.2
|
1.0
|
|
CB
|
B:CYS1140
|
3.2
|
25.7
|
1.0
|
|
HB3
|
B:CYS1137
|
3.2
|
20.1
|
1.0
|
|
CB
|
B:CYS1137
|
3.3
|
20.1
|
1.0
|
|
HB3
|
B:CYS1122
|
3.3
|
16.2
|
1.0
|
|
HB2
|
B:CYS1137
|
3.4
|
20.1
|
1.0
|
|
CB
|
B:CYS1122
|
3.4
|
16.2
|
1.0
|
|
N
|
B:CYS1140
|
3.7
|
25.7
|
1.0
|
|
HB2
|
B:LEU1121
|
3.9
|
18.2
|
1.0
|
|
N
|
B:CYS1122
|
3.9
|
16.2
|
1.0
|
|
HB3
|
B:CYS1140
|
3.9
|
25.7
|
1.0
|
|
CA
|
B:CYS1140
|
4.1
|
25.7
|
1.0
|
|
HB2
|
B:CYS1122
|
4.2
|
16.2
|
1.0
|
|
H
|
B:LEU1121
|
4.2
|
18.2
|
1.0
|
|
CA
|
B:CYS1122
|
4.2
|
16.2
|
1.0
|
|
OD1
|
B:ASN1142
|
4.3
|
24.0
|
1.0
|
|
CA
|
B:CYS1119
|
4.4
|
15.9
|
1.0
|
|
HA3
|
B:GLY1139
|
4.5
|
22.1
|
1.0
|
|
H
|
B:ILE1124
|
4.5
|
14.3
|
1.0
|
|
HA
|
B:CYS1140
|
4.6
|
25.7
|
1.0
|
|
HB
|
B:ILE1124
|
4.6
|
14.3
|
1.0
|
|
H
|
B:GLY1123
|
4.7
|
13.2
|
1.0
|
|
CA
|
B:CYS1137
|
4.7
|
20.1
|
1.0
|
|
C
|
B:GLY1139
|
4.7
|
22.1
|
1.0
|
|
CB
|
B:LEU1121
|
4.8
|
18.2
|
1.0
|
|
HA
|
B:CYS1119
|
4.8
|
15.9
|
1.0
|
|
H
|
B:GLY1139
|
4.8
|
22.1
|
1.0
|
|
N
|
B:LEU1121
|
4.9
|
18.2
|
1.0
|
|
C
|
B:CYS1119
|
4.9
|
15.9
|
1.0
|
|
C
|
B:CYS1122
|
4.9
|
16.2
|
1.0
|
|
HD21
|
B:ASN1142
|
4.9
|
24.0
|
1.0
|
|
H
|
B:CYS1119
|
5.0
|
15.9
|
1.0
|
|
C
|
B:LEU1121
|
5.0
|
18.2
|
1.0
|
|
CA
|
B:GLY1139
|
5.0
|
22.1
|
1.0
|
|
Zinc binding site 4 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 4 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn301
b:48.6
occ:1.00
|
SG
|
C:CYS88
|
2.3
|
17.5
|
1.0
|
|
SG
|
C:CYS94
|
2.3
|
10.0
|
1.0
|
|
SG
|
C:CYS90
|
2.3
|
22.5
|
1.0
|
|
SG
|
C:CYS97
|
2.3
|
8.3
|
1.0
|
|
HB3
|
C:CYS97
|
2.9
|
8.3
|
1.0
|
|
HB3
|
C:CYS88
|
2.9
|
17.5
|
1.0
|
|
CB
|
C:CYS88
|
3.1
|
17.5
|
1.0
|
|
HB3
|
C:CYS90
|
3.2
|
22.5
|
1.0
|
|
HB3
|
C:CYS94
|
3.2
|
10.0
|
1.0
|
|
CB
|
C:CYS97
|
3.2
|
8.3
|
1.0
|
|
CB
|
C:CYS94
|
3.3
|
10.0
|
1.0
|
|
CB
|
C:CYS90
|
3.4
|
22.5
|
1.0
|
|
HB2
|
C:CYS88
|
3.4
|
17.5
|
1.0
|
|
H
|
C:CYS94
|
3.4
|
10.0
|
1.0
|
|
N
|
C:CYS94
|
3.6
|
10.0
|
1.0
|
|
H
|
C:CYS97
|
3.6
|
8.3
|
1.0
|
|
H
|
C:CYS90
|
3.8
|
22.5
|
1.0
|
|
CA
|
C:CYS94
|
3.9
|
10.0
|
1.0
|
|
HB2
|
C:CYS97
|
3.9
|
8.3
|
1.0
|
|
N
|
C:CYS97
|
3.9
|
8.3
|
1.0
|
|
HB2
|
C:GLU96
|
4.0
|
10.3
|
1.0
|
|
HB2
|
C:CYS90
|
4.0
|
22.5
|
1.0
|
|
C
|
C:PHE93
|
4.1
|
15.8
|
1.0
|
|
HB2
|
C:CYS94
|
4.1
|
10.0
|
1.0
|
|
O
|
C:CYS94
|
4.1
|
10.0
|
1.0
|
|
HA
|
C:PHE93
|
4.2
|
15.8
|
1.0
|
|
CA
|
C:CYS97
|
4.2
|
8.3
|
1.0
|
|
H
|
C:GLU96
|
4.3
|
10.3
|
1.0
|
|
C
|
C:CYS94
|
4.3
|
10.0
|
1.0
|
|
HG
|
C:SER85
|
4.4
|
8.4
|
1.0
|
|
N
|
C:CYS90
|
4.5
|
22.5
|
1.0
|
|
CA
|
C:CYS90
|
4.5
|
22.5
|
1.0
|
|
CA
|
C:CYS88
|
4.5
|
17.5
|
1.0
|
|
O
|
C:PHE93
|
4.6
|
15.8
|
1.0
|
|
HA
|
C:SER85
|
4.6
|
8.4
|
1.0
|
|
CA
|
C:PHE93
|
4.7
|
15.8
|
1.0
|
|
C
|
C:GLU96
|
4.7
|
10.3
|
1.0
|
|
O
|
C:GLU91
|
4.8
|
33.2
|
1.0
|
|
HA
|
C:CYS94
|
4.8
|
10.0
|
1.0
|
|
HA
|
C:CYS88
|
4.8
|
17.5
|
1.0
|
|
CB
|
C:GLU96
|
4.8
|
10.3
|
1.0
|
|
N
|
C:GLU96
|
4.9
|
10.3
|
1.0
|
|
C
|
C:CYS88
|
4.9
|
17.5
|
1.0
|
|
HA
|
C:CYS97
|
4.9
|
8.3
|
1.0
|
|
Zinc binding site 5 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 5 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:48.0
occ:1.00
|
SG
|
I:CYS42
|
2.3
|
28.2
|
1.0
|
|
SG
|
I:CYS20
|
2.3
|
24.1
|
1.0
|
|
SG
|
I:CYS17
|
2.3
|
22.1
|
1.0
|
|
SG
|
I:CYS39
|
2.3
|
25.5
|
1.0
|
|
HB2
|
I:CYS17
|
2.5
|
22.1
|
1.0
|
|
HB3
|
I:CYS17
|
2.6
|
22.1
|
1.0
|
|
CB
|
I:CYS17
|
2.6
|
22.1
|
1.0
|
|
HB2
|
I:CYS39
|
2.7
|
25.5
|
1.0
|
|
HB3
|
I:CYS39
|
2.7
|
25.5
|
1.0
|
|
CB
|
I:CYS39
|
2.8
|
25.5
|
1.0
|
|
H
|
I:CYS42
|
3.1
|
28.2
|
1.0
|
|
H
|
I:CYS20
|
3.2
|
24.1
|
1.0
|
|
HB3
|
I:CYS42
|
3.6
|
28.2
|
1.0
|
|
CB
|
I:CYS42
|
3.6
|
28.2
|
1.0
|
|
HB3
|
I:TYR44
|
3.6
|
25.2
|
1.0
|
|
HB3
|
I:ASN41
|
3.8
|
26.9
|
1.0
|
|
HB2
|
I:GLU19
|
3.8
|
28.9
|
1.0
|
|
CB
|
I:CYS20
|
3.8
|
24.1
|
1.0
|
|
N
|
I:CYS42
|
3.9
|
28.2
|
1.0
|
|
H
|
I:ASN22
|
3.9
|
19.3
|
1.0
|
|
N
|
I:CYS20
|
4.0
|
24.1
|
1.0
|
|
HB2
|
I:ASN22
|
4.0
|
19.3
|
1.0
|
|
HB3
|
I:CYS20
|
4.0
|
24.1
|
1.0
|
|
H
|
I:GLU19
|
4.1
|
28.9
|
1.0
|
|
CA
|
I:CYS17
|
4.1
|
22.1
|
1.0
|
|
H
|
I:TYR44
|
4.2
|
25.2
|
1.0
|
|
CA
|
I:CYS42
|
4.3
|
28.2
|
1.0
|
|
HB2
|
I:TYR44
|
4.3
|
25.2
|
1.0
|
|
CA
|
I:CYS39
|
4.3
|
25.5
|
1.0
|
|
HB2
|
I:CYS42
|
4.3
|
28.2
|
1.0
|
|
CB
|
I:TYR44
|
4.4
|
25.2
|
1.0
|
|
CA
|
I:CYS20
|
4.4
|
24.1
|
1.0
|
|
HD23
|
I:LEU24
|
4.5
|
23.2
|
1.0
|
|
HA
|
I:CYS17
|
4.5
|
22.1
|
1.0
|
|
HB2
|
I:CYS20
|
4.5
|
24.1
|
1.0
|
|
H
|
I:ASN21
|
4.5
|
20.0
|
1.0
|
|
H
|
I:ASN41
|
4.5
|
26.9
|
1.0
|
|
HD2
|
I:TYR44
|
4.6
|
25.2
|
1.0
|
|
H
|
I:CYS17
|
4.6
|
22.1
|
1.0
|
|
HA
|
I:CYS39
|
4.6
|
25.5
|
1.0
|
|
HD21
|
I:LEU24
|
4.6
|
23.2
|
1.0
|
|
CB
|
I:ASN41
|
4.7
|
26.9
|
1.0
|
|
C
|
I:CYS42
|
4.8
|
28.2
|
1.0
|
|
CB
|
I:GLU19
|
4.8
|
28.9
|
1.0
|
|
N
|
I:ASN22
|
4.8
|
19.3
|
1.0
|
|
O
|
I:ASN22
|
4.8
|
19.3
|
1.0
|
|
C
|
I:CYS17
|
4.8
|
22.1
|
1.0
|
|
N
|
I:GLU19
|
4.9
|
28.9
|
1.0
|
|
N
|
I:ASN21
|
4.9
|
20.0
|
1.0
|
|
N
|
I:CYS17
|
4.9
|
22.1
|
1.0
|
|
CB
|
I:ASN22
|
4.9
|
19.3
|
1.0
|
|
C
|
I:CYS20
|
4.9
|
24.1
|
1.0
|
|
H
|
I:CYS39
|
4.9
|
25.5
|
1.0
|
|
C
|
I:CYS39
|
5.0
|
25.5
|
1.0
|
|
Zinc binding site 6 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 6 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:49.7
occ:1.00
|
SG
|
I:CYS89
|
2.3
|
33.0
|
1.0
|
|
SG
|
I:CYS119
|
2.3
|
27.5
|
1.0
|
|
SG
|
I:CYS114
|
2.3
|
24.2
|
1.0
|
|
SG
|
I:CYS86
|
2.3
|
30.3
|
1.0
|
|
HB2
|
I:CYS114
|
2.7
|
24.2
|
1.0
|
|
CB
|
I:CYS114
|
2.8
|
24.2
|
1.0
|
|
HB3
|
I:CYS114
|
2.8
|
24.2
|
1.0
|
|
HB3
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
CB
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
HB2
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
HB3
|
I:LYS88
|
3.2
|
32.4
|
1.0
|
|
HB3
|
I:HIS121
|
3.3
|
27.7
|
1.0
|
|
HB3
|
I:CYS89
|
3.4
|
33.0
|
1.0
|
|
H
|
I:CYS89
|
3.4
|
33.0
|
1.0
|
|
HB3
|
I:CYS119
|
3.4
|
27.5
|
1.0
|
|
CB
|
I:CYS119
|
3.5
|
27.5
|
1.0
|
|
CB
|
I:CYS89
|
3.5
|
33.0
|
1.0
|
|
H
|
I:HIS121
|
3.6
|
27.7
|
1.0
|
|
HB3
|
I:ALA116
|
3.8
|
25.7
|
1.0
|
|
HB2
|
I:CYS119
|
3.8
|
27.5
|
1.0
|
|
HB2
|
I:HIS121
|
3.9
|
27.7
|
1.0
|
|
N
|
I:CYS89
|
4.0
|
33.0
|
1.0
|
|
HB3
|
I:HIS91
|
4.0
|
30.6
|
1.0
|
|
CB
|
I:HIS121
|
4.0
|
27.7
|
1.0
|
|
H
|
I:HIS91
|
4.1
|
30.6
|
1.0
|
|
HB2
|
I:HIS91
|
4.1
|
30.6
|
1.0
|
|
CB
|
I:LYS88
|
4.2
|
32.4
|
1.0
|
|
HB2
|
I:CYS89
|
4.2
|
33.0
|
1.0
|
|
HG2
|
I:LYS88
|
4.3
|
32.4
|
1.0
|
|
CA
|
I:CYS114
|
4.3
|
24.2
|
1.0
|
|
CA
|
I:CYS89
|
4.3
|
33.0
|
1.0
|
|
N
|
I:HIS121
|
4.4
|
27.7
|
1.0
|
|
HB2
|
I:LYS88
|
4.5
|
32.4
|
1.0
|
|
CB
|
I:HIS91
|
4.5
|
30.6
|
1.0
|
|
HB2
|
I:ALA116
|
4.5
|
25.7
|
1.0
|
|
H
|
I:ALA116
|
4.5
|
25.7
|
1.0
|
|
HZ3
|
I:TRP123
|
4.6
|
23.0
|
1.0
|
|
CA
|
I:CYS86
|
4.6
|
30.3
|
1.0
|
|
CB
|
I:ALA116
|
4.6
|
25.7
|
1.0
|
|
H
|
I:GLY120
|
4.6
|
23.3
|
1.0
|
|
HA
|
I:CYS114
|
4.6
|
24.2
|
1.0
|
|
H
|
I:GLY90
|
4.7
|
30.2
|
1.0
|
|
CG
|
I:LYS88
|
4.8
|
32.4
|
1.0
|
|
CA
|
I:CYS119
|
4.8
|
27.5
|
1.0
|
|
N
|
I:GLY120
|
4.8
|
23.3
|
1.0
|
|
CA
|
I:HIS121
|
4.8
|
27.7
|
1.0
|
|
N
|
I:HIS91
|
4.9
|
30.6
|
1.0
|
|
HD2
|
I:HIS121
|
4.9
|
27.7
|
1.0
|
|
HA
|
I:CYS86
|
4.9
|
30.3
|
1.0
|
|
H
|
I:CYS114
|
4.9
|
24.2
|
1.0
|
|
C
|
I:CYS119
|
4.9
|
27.5
|
1.0
|
|
H
|
I:LYS88
|
5.0
|
32.4
|
1.0
|
|
C
|
I:LYS88
|
5.0
|
32.4
|
1.0
|
|
C
|
I:CYS89
|
5.0
|
33.0
|
1.0
|
|
C
|
I:CYS114
|
5.0
|
24.2
|
1.0
|
|
Zinc binding site 7 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 7 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:15.3
occ:1.00
|
SG
|
J:CYS10
|
2.3
|
5.3
|
1.0
|
|
SG
|
J:CYS45
|
2.3
|
1.3
|
1.0
|
|
SG
|
J:CYS7
|
2.3
|
5.7
|
1.0
|
|
SG
|
J:CYS44
|
2.3
|
3.0
|
1.0
|
|
HB3
|
J:CYS7
|
2.9
|
5.7
|
1.0
|
|
H
|
J:CYS10
|
3.0
|
5.3
|
1.0
|
|
CB
|
J:CYS7
|
3.1
|
5.7
|
1.0
|
|
HB2
|
J:CYS7
|
3.2
|
5.7
|
1.0
|
|
H
|
J:CYS45
|
3.2
|
1.3
|
1.0
|
|
HB2
|
J:CYS44
|
3.3
|
3.0
|
1.0
|
|
N
|
J:CYS45
|
3.3
|
1.3
|
1.0
|
|
HB3
|
J:CYS10
|
3.4
|
5.3
|
1.0
|
|
HE
|
J:ARG42
|
3.4
|
10.4
|
1.0
|
|
CB
|
J:CYS44
|
3.4
|
3.0
|
1.0
|
|
CB
|
J:CYS10
|
3.5
|
5.3
|
1.0
|
|
HB
|
J:THR9
|
3.6
|
8.1
|
1.0
|
|
CB
|
J:CYS45
|
3.7
|
1.3
|
1.0
|
|
HA
|
J:CYS45
|
3.7
|
1.3
|
1.0
|
|
CA
|
J:CYS45
|
3.8
|
1.3
|
1.0
|
|
N
|
J:CYS10
|
3.8
|
5.3
|
1.0
|
|
C
|
J:CYS44
|
3.8
|
3.0
|
1.0
|
|
HB3
|
J:LYS12
|
4.0
|
2.4
|
1.0
|
|
HB2
|
J:ARG42
|
4.1
|
10.4
|
1.0
|
|
HH21
|
J:ARG42
|
4.1
|
10.4
|
1.0
|
|
H
|
J:LYS12
|
4.1
|
2.4
|
1.0
|
|
HB3
|
J:CYS45
|
4.2
|
1.3
|
1.0
|
|
HB3
|
J:CYS44
|
4.2
|
3.0
|
1.0
|
|
CA
|
J:CYS44
|
4.2
|
3.0
|
1.0
|
|
NE
|
J:ARG42
|
4.2
|
10.4
|
1.0
|
|
CA
|
J:CYS10
|
4.2
|
5.3
|
1.0
|
|
HB2
|
J:CYS10
|
4.3
|
5.3
|
1.0
|
|
HB2
|
J:CYS45
|
4.3
|
1.3
|
1.0
|
|
H
|
J:THR9
|
4.4
|
8.1
|
1.0
|
|
H
|
J:GLY11
|
4.4
|
2.9
|
1.0
|
|
HB2
|
J:LYS12
|
4.4
|
2.4
|
1.0
|
|
CB
|
J:THR9
|
4.5
|
8.1
|
1.0
|
|
CA
|
J:CYS7
|
4.5
|
5.7
|
1.0
|
|
HB3
|
J:ARG42
|
4.5
|
10.4
|
1.0
|
|
O
|
J:CYS44
|
4.5
|
3.0
|
1.0
|
|
CB
|
J:LYS12
|
4.6
|
2.4
|
1.0
|
|
H
|
J:CYS44
|
4.7
|
3.0
|
1.0
|
|
HD2
|
J:ARG42
|
4.7
|
10.4
|
1.0
|
|
HH21
|
J:ARG47
|
4.7
|
5.1
|
1.0
|
|
HG22
|
J:THR9
|
4.7
|
8.1
|
1.0
|
|
CB
|
J:ARG42
|
4.8
|
10.4
|
1.0
|
|
NH2
|
J:ARG42
|
4.8
|
10.4
|
1.0
|
|
N
|
J:GLY11
|
4.9
|
2.9
|
1.0
|
|
C
|
J:THR9
|
4.9
|
8.1
|
1.0
|
|
N
|
J:CYS44
|
4.9
|
3.0
|
1.0
|
|
HD3
|
J:LYS12
|
4.9
|
2.4
|
1.0
|
|
HA
|
J:CYS7
|
4.9
|
5.7
|
1.0
|
|
N
|
J:LYS12
|
4.9
|
2.4
|
1.0
|
|
HG3
|
J:MET48
|
4.9
|
5.8
|
1.0
|
|
N
|
J:THR9
|
5.0
|
8.1
|
1.0
|
|
CZ
|
J:ARG42
|
5.0
|
10.4
|
1.0
|
|
C
|
J:CYS10
|
5.0
|
5.3
|
1.0
|
|
HA
|
J:CYS44
|
5.0
|
3.0
|
1.0
|
|
CD
|
J:ARG42
|
5.0
|
10.4
|
1.0
|
|
Zinc binding site 8 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 8 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:56.3
occ:1.00
|
SG
|
L:CYS22
|
2.3
|
22.2
|
1.0
|
|
SG
|
L:CYS19
|
2.3
|
19.4
|
1.0
|
|
SG
|
L:CYS36
|
2.3
|
24.0
|
1.0
|
|
SG
|
L:CYS39
|
2.3
|
24.6
|
1.0
|
|
HB3
|
L:CYS36
|
2.8
|
24.0
|
1.0
|
|
HB2
|
L:CYS19
|
2.8
|
19.4
|
1.0
|
|
CB
|
L:CYS19
|
3.0
|
19.4
|
1.0
|
|
CB
|
L:CYS36
|
3.0
|
24.0
|
1.0
|
|
HB3
|
L:CYS22
|
3.0
|
22.2
|
1.0
|
|
H
|
L:CYS22
|
3.1
|
22.2
|
1.0
|
|
HB3
|
L:CYS19
|
3.1
|
19.4
|
1.0
|
|
HB2
|
L:CYS36
|
3.2
|
24.0
|
1.0
|
|
H
|
L:CYS39
|
3.2
|
24.6
|
1.0
|
|
CB
|
L:CYS22
|
3.3
|
22.2
|
1.0
|
|
HB2
|
L:GLU38
|
3.4
|
28.4
|
1.0
|
|
HB3
|
L:GLU21
|
3.6
|
20.7
|
1.0
|
|
CB
|
L:CYS39
|
3.7
|
24.6
|
1.0
|
|
HB3
|
L:TYR41
|
3.7
|
17.6
|
1.0
|
|
HB3
|
L:GLU38
|
3.8
|
28.4
|
1.0
|
|
N
|
L:CYS22
|
3.8
|
22.2
|
1.0
|
|
HB3
|
L:CYS39
|
3.8
|
24.6
|
1.0
|
|
N
|
L:CYS39
|
3.8
|
24.6
|
1.0
|
|
H
|
L:TYR41
|
3.9
|
17.6
|
1.0
|
|
HB2
|
L:TYR41
|
3.9
|
17.6
|
1.0
|
|
HG1
|
L:THR24
|
3.9
|
25.2
|
1.0
|
|
HB2
|
L:CYS22
|
4.0
|
22.2
|
1.0
|
|
HB
|
L:THR24
|
4.1
|
25.2
|
1.0
|
|
CA
|
L:CYS22
|
4.1
|
22.2
|
1.0
|
|
CB
|
L:GLU38
|
4.1
|
28.4
|
1.0
|
|
CB
|
L:TYR41
|
4.3
|
17.6
|
1.0
|
|
CA
|
L:CYS39
|
4.3
|
24.6
|
1.0
|
|
H
|
L:THR24
|
4.4
|
25.2
|
1.0
|
|
H
|
L:GLU21
|
4.4
|
20.7
|
1.0
|
|
CA
|
L:CYS36
|
4.4
|
24.0
|
1.0
|
|
OG1
|
L:THR24
|
4.4
|
25.2
|
1.0
|
|
CA
|
L:CYS19
|
4.4
|
19.4
|
1.0
|
|
HB2
|
L:CYS39
|
4.5
|
24.6
|
1.0
|
|
H
|
L:HIS23
|
4.5
|
23.0
|
1.0
|
|
H
|
L:GLY40
|
4.5
|
24.7
|
1.0
|
|
CB
|
L:GLU21
|
4.6
|
20.7
|
1.0
|
|
HA
|
L:CYS19
|
4.7
|
19.4
|
1.0
|
|
N
|
L:TYR41
|
4.7
|
17.6
|
1.0
|
|
C
|
L:CYS22
|
4.7
|
22.2
|
1.0
|
|
C
|
L:CYS36
|
4.7
|
24.0
|
1.0
|
|
CB
|
L:THR24
|
4.7
|
25.2
|
1.0
|
|
HD21
|
L:ASN26
|
4.8
|
23.4
|
1.0
|
|
C
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
C
|
L:CYS39
|
4.8
|
24.6
|
1.0
|
|
H
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
N
|
L:HIS23
|
4.8
|
23.0
|
1.0
|
|
N
|
L:GLY40
|
4.8
|
24.7
|
1.0
|
|
CA
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
HA
|
L:CYS36
|
4.9
|
24.0
|
1.0
|
|
HA
|
L:CYS22
|
4.9
|
22.2
|
1.0
|
|
HG3
|
L:GLU38
|
4.9
|
28.4
|
1.0
|
|
C
|
L:GLU21
|
4.9
|
20.7
|
1.0
|
|
Zinc binding site 9 out
of 9 in 8b3f
Go back to
Zinc Binding Sites List in 8b3f
Zinc binding site 9 out
of 9 in the Pol II-Csb-Csa-DDB1-ELOF1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Pol II-Csb-Csa-DDB1-ELOF1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn101
b:51.1
occ:1.00
|
SG
|
M:CYS50
|
2.3
|
33.1
|
1.0
|
|
SG
|
M:CYS29
|
2.3
|
31.1
|
1.0
|
|
SG
|
M:CYS26
|
2.3
|
34.2
|
1.0
|
|
SG
|
M:CYS53
|
2.3
|
32.9
|
1.0
|
|
HB3
|
M:CYS26
|
2.9
|
34.2
|
1.0
|
|
HB2
|
M:CYS50
|
2.9
|
33.1
|
1.0
|
|
CB
|
M:CYS26
|
3.0
|
34.2
|
1.0
|
|
HB3
|
M:CYS50
|
3.0
|
33.1
|
1.0
|
|
CB
|
M:CYS50
|
3.0
|
33.1
|
1.0
|
|
HB2
|
M:CYS26
|
3.0
|
34.2
|
1.0
|
|
H
|
M:CYS53
|
3.0
|
32.9
|
1.0
|
|
H
|
M:CYS29
|
3.2
|
31.1
|
1.0
|
|
HB3
|
M:CYS53
|
3.2
|
32.9
|
1.0
|
|
HB3
|
M:CYS29
|
3.3
|
31.1
|
1.0
|
|
CB
|
M:CYS53
|
3.4
|
32.9
|
1.0
|
|
CB
|
M:CYS29
|
3.4
|
31.1
|
1.0
|
|
HB2
|
M:PHE28
|
3.6
|
31.9
|
1.0
|
|
N
|
M:CYS53
|
3.8
|
32.9
|
1.0
|
|
N
|
M:CYS29
|
3.8
|
31.1
|
1.0
|
|
HB
|
M:VAL52
|
3.9
|
31.2
|
1.0
|
|
HB2
|
M:GLU55
|
4.0
|
35.4
|
1.0
|
|
HG
|
M:SER34
|
4.0
|
30.5
|
1.0
|
|
CA
|
M:CYS53
|
4.1
|
32.9
|
1.0
|
|
HB2
|
M:CYS53
|
4.1
|
32.9
|
1.0
|
|
HB2
|
M:CYS29
|
4.2
|
31.1
|
1.0
|
|
CA
|
M:CYS29
|
4.2
|
31.1
|
1.0
|
|
H
|
M:GLU55
|
4.3
|
35.4
|
1.0
|
|
H
|
M:PHE28
|
4.3
|
31.9
|
1.0
|
|
H
|
M:VAL52
|
4.4
|
31.2
|
1.0
|
|
CA
|
M:CYS50
|
4.5
|
33.1
|
1.0
|
|
CA
|
M:CYS26
|
4.5
|
34.2
|
1.0
|
|
CB
|
M:PHE28
|
4.5
|
31.9
|
1.0
|
|
HB2
|
M:HIS31
|
4.6
|
33.0
|
1.0
|
|
HH2
|
M:TRP74
|
4.6
|
33.7
|
1.0
|
|
OG
|
M:SER34
|
4.6
|
30.5
|
1.0
|
|
H
|
M:LEU54
|
4.7
|
33.5
|
1.0
|
|
C
|
M:CYS53
|
4.7
|
32.9
|
1.0
|
|
H
|
M:HIS31
|
4.7
|
33.0
|
1.0
|
|
C
|
M:PHE28
|
4.8
|
31.9
|
1.0
|
|
HA
|
M:CYS50
|
4.8
|
33.1
|
1.0
|
|
HB3
|
M:PHE28
|
4.8
|
31.9
|
1.0
|
|
HA
|
M:CYS26
|
4.8
|
34.2
|
1.0
|
|
CB
|
M:VAL52
|
4.8
|
31.2
|
1.0
|
|
H
|
M:ASN30
|
4.8
|
30.2
|
1.0
|
|
CB
|
M:GLU55
|
4.9
|
35.4
|
1.0
|
|
HD2
|
M:PHE28
|
4.9
|
31.9
|
1.0
|
|
N
|
M:PHE28
|
4.9
|
31.9
|
1.0
|
|
N
|
M:LEU54
|
4.9
|
33.5
|
1.0
|
|
C
|
M:VAL52
|
4.9
|
31.2
|
1.0
|
|
HA
|
M:CYS53
|
5.0
|
32.9
|
1.0
|
|
C
|
M:CYS29
|
5.0
|
31.1
|
1.0
|
|
HA
|
M:CYS29
|
5.0
|
31.1
|
1.0
|
|
CA
|
M:PHE28
|
5.0
|
31.9
|
1.0
|
|
Reference:
G.Kokic,
P.Cramer.
Pol II-Csb-Csa-DDB1-ELOF1 Structure. To Be Published.
Page generated: Wed Oct 30 18:09:16 2024
|
