Zinc in PDB 7z6s: Matcap Bound to A Human 14 Protofilament Microtubule

The structure of Matcap Bound to A Human 14 Protofilament Microtubule also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Matcap Bound to A Human 14 Protofilament Microtubule (pdb code 7z6s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Matcap Bound to A Human 14 Protofilament Microtubule, PDB code: 7z6s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Matcap Bound to A Human 14 Protofilament Microtubule


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Matcap Bound to A Human 14 Protofilament Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn501 b:48.3 occ:1.00 NE2 C:HIS280 2.2 44.4 1.0 OE1 C:GLU316 2.3 48.6 1.0 NE2 C:HIS285 2.5 41.8 1.0 OE2 C:GLU316 2.8 49.1 1.0 CD C:GLU316 2.9 48.3 1.0 CE1 C:HIS280 3.1 43.1 1.0 CD2 C:HIS280 3.2 45.0 1.0 CD2 C:HIS285 3.3 42.6 1.0 CE1 C:HIS285 3.6 42.1 1.0 OH C:TYR393 3.9 45.9 1.0 CE1 C:TYR393 4.0 40.9 1.0 ND1 C:HIS280 4.3 41.4 1.0 CG C:HIS280 4.4 43.4 1.0 CG C:GLU316 4.4 47.0 1.0 CZ C:TYR393 4.5 42.0 1.0 OE1 C:GLN281 4.5 30.0 1.0 CG C:HIS285 4.5 42.3 1.0 ND1 C:HIS285 4.6 41.9 1.0 CB C:ALA319 4.8 44.9 1.0

Zinc binding site 2 out of 2 in the Matcap Bound to A Human 14 Protofilament Microtubule


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Matcap Bound to A Human 14 Protofilament Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn501 b:48.3 occ:1.00 NE2 E:HIS280 2.2 44.4 1.0 OE1 E:GLU316 2.3 48.6 1.0 NE2 E:HIS285 2.5 41.8 1.0 OE2 E:GLU316 2.8 49.1 1.0 CD E:GLU316 2.9 48.3 1.0 CE1 E:HIS280 3.1 43.1 1.0 CD2 E:HIS280 3.2 45.0 1.0 CD2 E:HIS285 3.3 42.6 1.0 CE1 E:HIS285 3.6 42.1 1.0 OH E:TYR393 3.9 45.9 1.0 CE1 E:TYR393 4.0 40.9 1.0 ND1 E:HIS280 4.3 41.4 1.0 CG E:HIS280 4.4 43.4 1.0 CG E:GLU316 4.4 47.0 1.0 NE2 E:GLN281 4.5 30.0 1.0 CZ E:TYR393 4.5 42.0 1.0 CG E:HIS285 4.5 42.3 1.0 ND1 E:HIS285 4.6 41.9 1.0 OE1 E:GLN281 4.7 30.0 1.0 CD E:GLN281 4.8 30.0 1.0 CB E:ALA319 4.8 44.9 1.0

L.Landskron, J.Bak, A.Adamopoulos, K.Kaplani, M.Moraiti, L.G.Van Den Hengel, J.Y.Song, O.B.Bleijerveld, J.Nieuwenhuis, T.Heidebrecht, L.Henneman, M.J.Moutin, M.Barisic, S.Taraviras, A.Perrakis, T.R.Brummelkamp. Posttranslational Modification of Microtubules By the Matcap Detyrosinase. Science V. 376 N6020 2022.
ISSN: ESSN 1095-9203
PubMed: 35482892
DOI: 10.1126/SCIENCE.ABN6020