Zinc in PDB 7ypb: Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release):
2.7.7.6;

The structure of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) (pdb code 7ypb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release), PDB code: 7ypb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1501 b:96.2 occ:1.00 SG D:CYS85 2.6 57.9 1.0 SG D:CYS70 2.7 60.5 1.0 CB D:CYS70 2.9 60.5 1.0 CE D:LYS87 3.6 55.3 1.0 N D:LEU71 3.7 55.8 1.0 CB D:CYS85 3.7 57.9 1.0 N D:CYS72 3.7 55.4 1.0 CB D:CYS72 4.0 55.4 1.0 CA D:CYS70 4.1 60.5 1.0 C D:CYS70 4.3 60.5 1.0 NZ D:LYS87 4.3 55.3 1.0 CA D:CYS72 4.5 55.4 1.0 CB D:LYS87 4.5 55.3 1.0 CA D:LEU71 4.5 55.8 1.0 C D:LEU71 4.6 55.8 1.0 CE D:LYS74 4.6 52.7 1.0 O D:VAL90 4.7 54.3 1.0 CB D:VAL90 4.7 54.3 1.0 CD D:LYS87 4.7 55.3 1.0 CB D:LEU71 4.8 55.8 1.0 CE2 D:TYR75 4.9 62.4 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:43.7 occ:1.00 SG D:CYS888 2.6 26.2 1.0 SG D:CYS898 2.6 22.3 1.0 SG D:CYS895 2.6 21.1 1.0 NH2 D:ARG883 3.1 34.0 1.0 CB D:CYS898 3.7 22.3 1.0 CB D:CYS888 3.7 26.2 1.0 CB D:CYS814 3.7 39.3 1.0 OG1 D:THR890 3.7 33.6 1.0 CB D:CYS895 3.8 21.1 1.0 CA D:CYS888 4.1 26.2 1.0 N D:ASP889 4.1 37.0 1.0 CZ D:ARG883 4.2 34.0 1.0 SG D:CYS814 4.3 39.3 1.0 N D:CYS895 4.5 21.1 1.0 NE D:ARG883 4.6 34.0 1.0 CG2 D:THR816 4.6 54.4 1.0 N D:CYS898 4.6 22.3 1.0 C D:CYS888 4.7 26.2 1.0 OG1 D:THR816 4.7 54.4 1.0 CA D:CYS898 4.7 22.3 1.0 CA D:CYS895 4.8 21.1 1.0 N D:THR890 4.8 33.6 1.0 CA D:CYS814 4.8 39.3 1.0 N D:CYS814 4.9 39.3 1.0 N D:GLY815 5.0 45.0 1.0

L.L.You, Y.Zhang. Cryo-Em Structure of Escherichia Coli Release Complex of Transcription Termination (Ttc-Release) To Be Published.