Zinc in PDB 7x6v: Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex)

The structure of Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex) also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Zinc atom in the Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex) (pdb code 7x6v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex), PDB code: 7x6v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:51.5 occ:1.00 SG B:CYS51 1.7 51.8 1.0 SG B:CYS35 2.3 49.8 1.0 SG B:CYS32 2.3 50.2 1.0 SG B:CYS54 2.4 49.1 1.0 CB B:CYS54 3.0 49.1 1.0 CB B:CYS51 3.2 51.8 1.0 CB B:CYS35 3.3 49.8 1.0 CB B:CYS32 3.3 50.2 1.0 N B:CYS51 3.7 51.8 1.0 CA B:CYS51 4.1 51.8 1.0 CA B:CYS54 4.2 49.1 1.0 N B:CYS35 4.3 49.8 1.0 CA B:CYS35 4.3 49.8 1.0 N B:CYS54 4.6 49.1 1.0 O A:LYS681 4.7 69.6 1.0 CA B:CYS32 4.8 50.2 1.0 C B:LEU50 4.8 52.3 1.0 CB B:HIS53 4.9 49.2 1.0 NE2 B:GLN37 5.0 51.3 1.0

Zinc binding site 2 out of 2 in the Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Lymphocytic Choriomeningitis Virus Polymerase- Matrix Z Protein Complex (Lcmv L-Z Complex) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:45.8 occ:1.00 NE2 B:HIS48 2.2 30.0 1.0 SG B:CYS65 2.3 54.9 1.0 SG B:CYS45 2.3 48.5 1.0 SG B:CYS68 2.3 55.0 1.0 CE1 B:HIS48 2.6 30.0 1.0 CD2 B:HIS48 3.0 30.0 1.0 CB B:CYS68 3.3 55.0 1.0 CB B:CYS45 3.4 48.5 1.0 ND1 B:HIS48 3.4 30.0 1.0 CB B:CYS65 3.6 54.9 1.0 CG B:HIS48 3.7 30.0 1.0 N B:CYS68 4.0 55.0 1.0 CA B:CYS68 4.3 55.0 1.0 N B:HIS46 4.6 49.6 1.0 N B:HIS48 4.6 52.7 1.0 N B:ASP47 4.7 51.9 1.0 CB B:LEU67 4.7 51.9 1.0 CA B:CYS45 4.8 48.5 1.0 CA B:CYS65 4.9 54.9 1.0 CB B:HIS48 5.0 30.0 1.0

L.Liu, P.Wang, A.Liu, L.Zhang, L.Yan, Y.Guo, G.Xiao, Z.Rao, Z.Lou. Structure Basis For Allosteric Regulation of Lymphocytic Choriomeningitis Virus Polymerase Function By Z Matrix Protein. Protein Cell 2023.
ISSN: ESSN 1674-8018
PubMed: 37038286
DOI: 10.1093/PROCEL/PWAD018