Zinc in PDB 7u1r: Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01

Protein crystallography data

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.27 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.59, 78.54, 111.26, 90, 90, 90
R / Rfree (%) 18.3 / 19.6

Other elements in 7u1r:

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Cadmium (Cd) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 (pdb code 7u1r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r:

Zinc binding site 1 out of 1 in 7u1r

Go back to Zinc Binding Sites List in 7u1r
Zinc binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:44.1
occ:1.00
NE2 A:HIS197 1.9 42.5 1.0
OE2 A:GLU198 2.2 69.3 1.0
CD2 A:HIS197 2.9 42.4 1.0
CE1 A:HIS197 3.0 42.6 1.0
CD A:GLU198 3.0 63.8 1.0
OE1 A:GLU198 3.2 46.4 1.0
CG A:HIS197 4.1 40.6 1.0
ND1 A:HIS197 4.1 43.0 1.0
CG A:GLU198 4.3 44.7 1.0
OG A:SER195 5.0 39.3 1.0

Reference:

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 To Be Published.
Page generated: Wed Oct 30 11:48:46 2024

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