Zinc in PDB 7sbj: Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

Enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

All present enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A:
5.1.3.1;

Protein crystallography data

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.74 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 83.89, 136.48, 148.74, 90, 90, 90
R / Rfree (%) 14.8 / 17.9

Other elements in 7sbj:

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A also contains other interesting chemical elements:

Chlorine (Cl) 9 atoms
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A (pdb code 7sbj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7sbj

Go back to Zinc Binding Sites List in 7sbj
Zinc binding site 1 out of 3 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:20.4
occ:0.49
OD1 A:ASP36 1.8 19.4 1.0
NE2 A:HIS34 2.3 12.8 1.0
ND1 A:HIS68 2.3 12.0 1.0
OD2 A:ASP177 2.6 29.0 1.0
CG A:ASP36 2.9 26.6 1.0
CE1 A:HIS34 3.2 15.1 1.0
CG A:HIS68 3.2 11.7 1.0
CE1 A:HIS68 3.3 13.8 1.0
CD2 A:HIS34 3.3 14.9 1.0
CB A:HIS68 3.4 11.9 1.0
OD2 A:ASP36 3.4 28.1 1.0
CG A:ASP177 3.8 21.2 1.0
O A:HOH416 3.9 34.0 1.0
CB A:ASP36 4.2 19.4 1.0
CD2 A:LEU137 4.3 10.7 1.0
CE A:MET70 4.3 18.6 1.0
ND1 A:HIS34 4.3 11.7 1.0
CD2 A:HIS68 4.3 9.8 1.0
NE2 A:HIS68 4.4 11.6 1.0
CG A:HIS34 4.4 13.7 1.0
CB A:ASP177 4.5 12.0 1.0
CA A:ASP36 4.6 17.2 1.0
OD1 A:ASP177 4.7 25.0 1.0
SD A:MET139 4.9 19.2 1.0
CA A:HIS68 4.9 10.0 1.0

Zinc binding site 2 out of 3 in 7sbj

Go back to Zinc Binding Sites List in 7sbj
Zinc binding site 2 out of 3 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:20.1
occ:0.61
OD1 B:ASP36 1.8 17.2 1.0
NE2 B:HIS34 2.2 11.3 1.0
ND1 B:HIS68 2.2 11.1 1.0
OD2 B:ASP177 2.8 25.8 1.0
CG B:ASP36 2.9 22.8 1.0
CG B:HIS68 3.2 11.7 1.0
CD2 B:HIS34 3.2 13.2 1.0
CE1 B:HIS34 3.2 13.6 1.0
CE1 B:HIS68 3.2 14.8 1.0
CB B:HIS68 3.4 11.3 1.0
OD2 B:ASP36 3.4 25.2 1.0
CG B:ASP177 3.9 20.8 1.0
O B:HOH465 4.0 31.1 1.0
CB B:ASP36 4.2 15.9 1.0
CE B:MET70 4.3 16.4 1.0
ND1 B:HIS34 4.3 11.3 1.0
CD2 B:HIS68 4.3 11.6 1.0
CD2 B:LEU137 4.3 9.8 1.0
NE2 B:HIS68 4.3 11.1 1.0
CG B:HIS34 4.3 10.9 1.0
CB B:ASP177 4.6 12.7 1.0
CA B:ASP36 4.6 15.0 1.0
O B:HOH564 4.7 25.6 0.5
OD1 B:ASP177 4.9 24.9 1.0
CA B:HIS68 4.9 9.5 1.0
SD B:MET139 4.9 17.2 1.0

Zinc binding site 3 out of 3 in 7sbj

Go back to Zinc Binding Sites List in 7sbj
Zinc binding site 3 out of 3 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:20.6
occ:0.50
OD1 C:ASP36 1.8 19.6 1.0
NE2 C:HIS34 2.2 13.7 1.0
ND1 C:HIS68 2.3 11.1 1.0
OD2 C:ASP177 2.6 28.9 1.0
CG C:ASP36 2.9 22.8 1.0
CG C:HIS68 3.2 12.7 1.0
CE1 C:HIS34 3.2 14.1 1.0
CD2 C:HIS34 3.2 16.1 1.0
CE1 C:HIS68 3.3 14.6 1.0
CB C:HIS68 3.4 12.3 1.0
OD2 C:ASP36 3.4 24.3 1.0
CG C:ASP177 3.8 16.6 1.0
O C:HOH427 3.9 33.1 1.0
CB C:ASP36 4.2 19.5 1.0
CE C:MET70 4.3 17.0 1.0
CD2 C:LEU137 4.3 9.6 1.0
ND1 C:HIS34 4.3 11.9 1.0
CD2 C:HIS68 4.4 12.5 1.0
CG C:HIS34 4.4 12.7 1.0
NE2 C:HIS68 4.4 10.9 1.0
CB C:ASP177 4.5 13.7 1.0
CA C:ASP36 4.6 18.2 1.0
OD1 C:ASP177 4.7 22.4 1.0
SD C:MET139 4.9 18.9 1.0
CA C:HIS68 4.9 10.1 1.0

Reference:

J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A To Be Published.
Page generated: Fri Nov 5 17:00:16 2021

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