Zinc in PDB 7qpr: Structure of Full Length Spot

All present enzymatic activity of Structure of Full Length Spot:
2.7.6.5;

The structure of Structure of Full Length Spot, PDB code: 7qpr was solved by A.Garcia-Pino, H.Tamman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.88 / 2.51
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	128.791, 133.761, 211.328, 90, 90, 90
R / Rfree (%)	22.1 / 25.8

The structure of Structure of Full Length Spot also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Chlorine	(Cl)	3 atoms
Manganese	(Mn)	4 atoms

The binding sites of Zinc atom in the Structure of Full Length Spot (pdb code 7qpr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Full Length Spot, PDB code: 7qpr:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Full Length Spot within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn802 b:54.3 occ:1.00 CD2 A:HIS585 2.1 51.9 1.0 SG A:CYS589 2.2 62.7 1.0 SG A:CYS565 2.4 50.2 1.0 SG A:CYS564 2.4 46.9 1.0 CG A:HIS585 3.1 51.1 1.0 CB A:CYS589 3.1 60.4 1.0 NE2 A:HIS585 3.2 52.7 1.0 CB A:CYS565 3.4 47.8 1.0 CB A:HIS585 3.5 49.5 1.0 CB A:ALA562 3.6 47.4 1.0 N A:CYS565 3.9 46.8 1.0 CB A:CYS564 3.9 46.6 1.0 CA A:HIS585 4.2 49.0 1.0 ND1 A:HIS585 4.3 52.5 1.0 CA A:CYS565 4.3 47.1 1.0 CE1 A:HIS585 4.3 52.7 1.0 CB A:ASN591 4.4 61.6 1.0 C A:CYS564 4.4 47.2 1.0 CA A:CYS589 4.6 59.5 1.0 CA A:CYS564 4.6 46.8 1.0 N A:LEU592 4.6 62.4 1.0 N A:ARG586 4.6 50.1 1.0 CB A:LEU592 4.8 63.5 1.0 N A:CYS564 4.8 46.5 1.0 C A:HIS585 4.9 49.7 1.0

Zinc binding site 2 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Full Length Spot within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn802 b:68.8 occ:1.00 ND1 B:HIS585 2.2 61.1 1.0 SG B:CYS589 2.2 78.5 1.0 SG B:CYS564 2.3 62.9 1.0 SG B:CYS565 2.5 61.1 1.0 CE1 B:HIS585 3.1 61.6 1.0 CB B:CYS589 3.2 78.2 1.0 CG B:HIS585 3.3 60.1 1.0 CB B:CYS565 3.4 57.4 1.0 CB B:CYS564 3.6 57.9 1.0 CB B:HIS585 3.7 59.9 1.0 N B:CYS565 3.8 56.0 1.0 CB B:ALA562 3.9 54.1 1.0 CA B:CYS565 4.3 56.5 1.0 C B:CYS564 4.3 56.3 1.0 NE2 B:HIS585 4.3 61.6 1.0 CB B:ASN591 4.3 87.7 1.0 CA B:HIS585 4.4 60.4 1.0 CD2 B:HIS585 4.4 60.8 1.0 CA B:CYS564 4.4 56.6 1.0 N B:LEU592 4.6 87.2 1.0 CA B:CYS589 4.6 78.3 1.0 N B:CYS564 4.7 56.5 1.0 N B:ARG586 4.8 63.6 1.0 CB B:LEU592 4.8 88.1 1.0 CG B:ASN591 5.0 91.7 1.0 N B:ASN591 5.0 85.4 1.0

Zinc binding site 3 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Full Length Spot within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn802 b:51.9 occ:1.00 SG C:CYS589 2.2 63.2 1.0 ND1 C:HIS585 2.2 55.3 1.0 SG C:CYS564 2.2 52.6 1.0 SG C:CYS565 2.4 49.9 1.0 CE1 C:HIS585 3.1 55.4 1.0 CB C:CYS589 3.1 61.1 1.0 CB C:CYS565 3.3 48.9 1.0 CG C:HIS585 3.3 53.9 1.0 N C:CYS565 3.6 49.3 1.0 CB C:CYS564 3.6 50.8 1.0 CB C:ALA562 3.7 54.5 1.0 CB C:HIS585 3.7 53.5 1.0 CA C:CYS565 4.1 49.1 1.0 C C:CYS564 4.2 49.9 1.0 NE2 C:HIS585 4.3 55.1 1.0 CB C:ASN591 4.3 62.8 1.0 CA C:CYS564 4.4 50.5 1.0 CA C:HIS585 4.4 53.9 1.0 CD2 C:HIS585 4.4 54.4 1.0 CA C:CYS589 4.6 60.8 1.0 N C:CYS564 4.7 50.9 1.0 N C:LEU592 4.7 62.9 1.0 N C:ARG586 4.7 53.1 1.0 CB C:LEU592 5.0 63.6 1.0 O C:CYS564 5.0 49.9 1.0

Zinc binding site 4 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Full Length Spot within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn802 b:70.7 occ:1.00 SG D:CYS589 2.1 97.4 1.0 ND1 D:HIS585 2.4 72.9 1.0 SG D:CYS564 2.4 64.4 1.0 SG D:CYS565 2.4 64.5 1.0 CB D:CYS589 3.0 96.5 1.0 CB D:CYS565 3.2 60.0 1.0 CE1 D:HIS585 3.3 73.4 1.0 CG D:HIS585 3.4 71.6 1.0 N D:CYS565 3.6 59.9 1.0 CB D:CYS564 3.7 61.2 1.0 CB D:HIS585 3.7 71.4 1.0 CB D:ALA562 4.0 62.7 1.0 CA D:CYS565 4.1 59.4 1.0 C D:CYS564 4.2 60.6 1.0 CA D:HIS585 4.4 71.7 1.0 CB D:ASN591 4.4 104.1 1.0 CA D:CYS564 4.4 60.8 1.0 CA D:CYS589 4.4 96.4 1.0 NE2 D:HIS585 4.5 73.4 1.0 CD2 D:HIS585 4.5 72.3 1.0 N D:LEU592 4.6 104.6 1.0 N D:ARG586 4.7 75.5 1.0 N D:CYS564 4.8 61.0 1.0 CB D:LEU592 4.9 105.7 1.0 N D:ASN591 4.9 102.3 1.0 O D:CYS564 5.0 60.8 1.0

A.Garcia-Pino, H.Tamman. Structure of Full Length Spot To Be Published.