Zinc in PDB 7qpr: Structure of Full Length Spot

Enzymatic activity of Structure of Full Length Spot

All present enzymatic activity of Structure of Full Length Spot:
2.7.6.5;

Protein crystallography data

The structure of Structure of Full Length Spot, PDB code: 7qpr was solved by A.Garcia-Pino, H.Tamman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.88 / 2.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 128.791, 133.761, 211.328, 90, 90, 90
R / Rfree (%) 22.1 / 25.8

Other elements in 7qpr:

The structure of Structure of Full Length Spot also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 3 atoms
Manganese (Mn) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Full Length Spot (pdb code 7qpr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Full Length Spot, PDB code: 7qpr:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 1 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:54.3
occ:1.00
 CD2 A:HIS585 2.1 51.9 1.0
SG A:CYS589 2.2 62.7 1.0
SG A:CYS565 2.4 50.2 1.0
SG A:CYS564 2.4 46.9 1.0
CG A:HIS585 3.1 51.1 1.0
CB A:CYS589 3.1 60.4 1.0
NE2 A:HIS585 3.2 52.7 1.0
CB A:CYS565 3.4 47.8 1.0
CB A:HIS585 3.5 49.5 1.0
CB A:ALA562 3.6 47.4 1.0
N A:CYS565 3.9 46.8 1.0
CB A:CYS564 3.9 46.6 1.0
CA A:HIS585 4.2 49.0 1.0
ND1 A:HIS585 4.3 52.5 1.0
CA A:CYS565 4.3 47.1 1.0
CE1 A:HIS585 4.3 52.7 1.0
CB A:ASN591 4.4 61.6 1.0
C A:CYS564 4.4 47.2 1.0
CA A:CYS589 4.6 59.5 1.0
CA A:CYS564 4.6 46.8 1.0
N A:LEU592 4.6 62.4 1.0
N A:ARG586 4.6 50.1 1.0
CB A:LEU592 4.8 63.5 1.0
N A:CYS564 4.8 46.5 1.0
C A:HIS585 4.9 49.7 1.0

Zinc binding site 2 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 2 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:68.8
occ:1.00
 ND1 B:HIS585 2.2 61.1 1.0
SG B:CYS589 2.2 78.5 1.0
SG B:CYS564 2.3 62.9 1.0
SG B:CYS565 2.5 61.1 1.0
CE1 B:HIS585 3.1 61.6 1.0
CB B:CYS589 3.2 78.2 1.0
CG B:HIS585 3.3 60.1 1.0
CB B:CYS565 3.4 57.4 1.0
CB B:CYS564 3.6 57.9 1.0
CB B:HIS585 3.7 59.9 1.0
N B:CYS565 3.8 56.0 1.0
CB B:ALA562 3.9 54.1 1.0
CA B:CYS565 4.3 56.5 1.0
C B:CYS564 4.3 56.3 1.0
NE2 B:HIS585 4.3 61.6 1.0
CB B:ASN591 4.3 87.7 1.0
CA B:HIS585 4.4 60.4 1.0
CD2 B:HIS585 4.4 60.8 1.0
CA B:CYS564 4.4 56.6 1.0
N B:LEU592 4.6 87.2 1.0
CA B:CYS589 4.6 78.3 1.0
N B:CYS564 4.7 56.5 1.0
N B:ARG586 4.8 63.6 1.0
CB B:LEU592 4.8 88.1 1.0
CG B:ASN591 5.0 91.7 1.0
N B:ASN591 5.0 85.4 1.0

Zinc binding site 3 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 3 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn802

b:51.9
occ:1.00
 SG C:CYS589 2.2 63.2 1.0
ND1 C:HIS585 2.2 55.3 1.0
SG C:CYS564 2.2 52.6 1.0
SG C:CYS565 2.4 49.9 1.0
CE1 C:HIS585 3.1 55.4 1.0
CB C:CYS589 3.1 61.1 1.0
CB C:CYS565 3.3 48.9 1.0
CG C:HIS585 3.3 53.9 1.0
N C:CYS565 3.6 49.3 1.0
CB C:CYS564 3.6 50.8 1.0
CB C:ALA562 3.7 54.5 1.0
CB C:HIS585 3.7 53.5 1.0
CA C:CYS565 4.1 49.1 1.0
C C:CYS564 4.2 49.9 1.0
NE2 C:HIS585 4.3 55.1 1.0
CB C:ASN591 4.3 62.8 1.0
CA C:CYS564 4.4 50.5 1.0
CA C:HIS585 4.4 53.9 1.0
CD2 C:HIS585 4.4 54.4 1.0
CA C:CYS589 4.6 60.8 1.0
N C:CYS564 4.7 50.9 1.0
N C:LEU592 4.7 62.9 1.0
N C:ARG586 4.7 53.1 1.0
CB C:LEU592 5.0 63.6 1.0
O C:CYS564 5.0 49.9 1.0

Zinc binding site 4 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 4 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn802

b:70.7
occ:1.00
 SG D:CYS589 2.1 97.4 1.0
ND1 D:HIS585 2.4 72.9 1.0
SG D:CYS564 2.4 64.4 1.0
SG D:CYS565 2.4 64.5 1.0
CB D:CYS589 3.0 96.5 1.0
CB D:CYS565 3.2 60.0 1.0
CE1 D:HIS585 3.3 73.4 1.0
CG D:HIS585 3.4 71.6 1.0
N D:CYS565 3.6 59.9 1.0
CB D:CYS564 3.7 61.2 1.0
CB D:HIS585 3.7 71.4 1.0
CB D:ALA562 4.0 62.7 1.0
CA D:CYS565 4.1 59.4 1.0
C D:CYS564 4.2 60.6 1.0
CA D:HIS585 4.4 71.7 1.0
CB D:ASN591 4.4 104.1 1.0
CA D:CYS564 4.4 60.8 1.0
CA D:CYS589 4.4 96.4 1.0
NE2 D:HIS585 4.5 73.4 1.0
CD2 D:HIS585 4.5 72.3 1.0
N D:LEU592 4.6 104.6 1.0
N D:ARG586 4.7 75.5 1.0
N D:CYS564 4.8 61.0 1.0
CB D:LEU592 4.9 105.7 1.0
N D:ASN591 4.9 102.3 1.0
O D:CYS564 5.0 60.8 1.0

Reference:

A.Garcia-Pino, H.Tamman. Structure of Full Length Spot To Be Published.
Page generated: Wed Oct 30 09:58:29 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy