Zinc in PDB 7qpr: Structure of Full Length Spot

Enzymatic activity of Structure of Full Length Spot

All present enzymatic activity of Structure of Full Length Spot:
2.7.6.5;

Protein crystallography data

The structure of Structure of Full Length Spot, PDB code: 7qpr was solved by A.Garcia-Pino, H.Tamman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.88 / 2.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 128.791, 133.761, 211.328, 90, 90, 90
R / Rfree (%) 22.1 / 25.8

Other elements in 7qpr:

The structure of Structure of Full Length Spot also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 3 atoms
Manganese (Mn) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Full Length Spot (pdb code 7qpr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Full Length Spot, PDB code: 7qpr:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 1 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:54.3
occ:1.00
 CD2 A:HIS585 2.1 51.9 1.0
SG A:CYS589 2.2 62.7 1.0
SG A:CYS565 2.4 50.2 1.0
SG A:CYS564 2.4 46.9 1.0
CG A:HIS585 3.1 51.1 1.0
CB A:CYS589 3.1 60.4 1.0
NE2 A:HIS585 3.2 52.7 1.0
CB A:CYS565 3.4 47.8 1.0
CB A:HIS585 3.5 49.5 1.0
CB A:ALA562 3.6 47.4 1.0
N A:CYS565 3.9 46.8 1.0
CB A:CYS564 3.9 46.6 1.0
CA A:HIS585 4.2 49.0 1.0
ND1 A:HIS585 4.3 52.5 1.0
CA A:CYS565 4.3 47.1 1.0
CE1 A:HIS585 4.3 52.7 1.0
CB A:ASN591 4.4 61.6 1.0
C A:CYS564 4.4 47.2 1.0
CA A:CYS589 4.6 59.5 1.0
CA A:CYS564 4.6 46.8 1.0
N A:LEU592 4.6 62.4 1.0
N A:ARG586 4.6 50.1 1.0
CB A:LEU592 4.8 63.5 1.0
N A:CYS564 4.8 46.5 1.0
C A:HIS585 4.9 49.7 1.0

Zinc binding site 2 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 2 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:68.8
occ:1.00
 ND1 B:HIS585 2.2 61.1 1.0
SG B:CYS589 2.2 78.5 1.0
SG B:CYS564 2.3 62.9 1.0
SG B:CYS565 2.5 61.1 1.0
CE1 B:HIS585 3.1 61.6 1.0
CB B:CYS589 3.2 78.2 1.0
CG B:HIS585 3.3 60.1 1.0
CB B:CYS565 3.4 57.4 1.0
CB B:CYS564 3.6 57.9 1.0
CB B:HIS585 3.7 59.9 1.0
N B:CYS565 3.8 56.0 1.0
CB B:ALA562 3.9 54.1 1.0
CA B:CYS565 4.3 56.5 1.0
C B:CYS564 4.3 56.3 1.0
NE2 B:HIS585 4.3 61.6 1.0
CB B:ASN591 4.3 87.7 1.0
CA B:HIS585 4.4 60.4 1.0
CD2 B:HIS585 4.4 60.8 1.0
CA B:CYS564 4.4 56.6 1.0
N B:LEU592 4.6 87.2 1.0
CA B:CYS589 4.6 78.3 1.0
N B:CYS564 4.7 56.5 1.0
N B:ARG586 4.8 63.6 1.0
CB B:LEU592 4.8 88.1 1.0
CG B:ASN591 5.0 91.7 1.0
N B:ASN591 5.0 85.4 1.0

Zinc binding site 3 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 3 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn802

b:51.9
occ:1.00
 SG C:CYS589 2.2 63.2 1.0
ND1 C:HIS585 2.2 55.3 1.0
SG C:CYS564 2.2 52.6 1.0
SG C:CYS565 2.4 49.9 1.0
CE1 C:HIS585 3.1 55.4 1.0
CB C:CYS589 3.1 61.1 1.0
CB C:CYS565 3.3 48.9 1.0
CG C:HIS585 3.3 53.9 1.0
N C:CYS565 3.6 49.3 1.0
CB C:CYS564 3.6 50.8 1.0
CB C:ALA562 3.7 54.5 1.0
CB C:HIS585 3.7 53.5 1.0
CA C:CYS565 4.1 49.1 1.0
C C:CYS564 4.2 49.9 1.0
NE2 C:HIS585 4.3 55.1 1.0
CB C:ASN591 4.3 62.8 1.0
CA C:CYS564 4.4 50.5 1.0
CA C:HIS585 4.4 53.9 1.0
CD2 C:HIS585 4.4 54.4 1.0
CA C:CYS589 4.6 60.8 1.0
N C:CYS564 4.7 50.9 1.0
N C:LEU592 4.7 62.9 1.0
N C:ARG586 4.7 53.1 1.0
CB C:LEU592 5.0 63.6 1.0
O C:CYS564 5.0 49.9 1.0

Zinc binding site 4 out of 4 in 7qpr

Go back to Zinc Binding Sites List in 7qpr
Zinc binding site 4 out of 4 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn802

b:70.7
occ:1.00
 SG D:CYS589 2.1 97.4 1.0
ND1 D:HIS585 2.4 72.9 1.0
SG D:CYS564 2.4 64.4 1.0
SG D:CYS565 2.4 64.5 1.0
CB D:CYS589 3.0 96.5 1.0
CB D:CYS565 3.2 60.0 1.0
CE1 D:HIS585 3.3 73.4 1.0
CG D:HIS585 3.4 71.6 1.0
N D:CYS565 3.6 59.9 1.0
CB D:CYS564 3.7 61.2 1.0
CB D:HIS585 3.7 71.4 1.0
CB D:ALA562 4.0 62.7 1.0
CA D:CYS565 4.1 59.4 1.0
C D:CYS564 4.2 60.6 1.0
CA D:HIS585 4.4 71.7 1.0
CB D:ASN591 4.4 104.1 1.0
CA D:CYS564 4.4 60.8 1.0
CA D:CYS589 4.4 96.4 1.0
NE2 D:HIS585 4.5 73.4 1.0
CD2 D:HIS585 4.5 72.3 1.0
N D:LEU592 4.6 104.6 1.0
N D:ARG586 4.7 75.5 1.0
N D:CYS564 4.8 61.0 1.0
CB D:LEU592 4.9 105.7 1.0
N D:ASN591 4.9 102.3 1.0
O D:CYS564 5.0 60.8 1.0

Reference:

A.Garcia-Pino, H.Tamman. Structure of Full Length Spot To Be Published.
Page generated: Wed Oct 30 09:58:29 2024

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