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Zinc in PDB 7qfy: Fusarium Oxysporum M36 Protease Without the Propeptide

Protein crystallography data

The structure of Fusarium Oxysporum M36 Protease Without the Propeptide, PDB code: 7qfy was solved by C.Wilkens, J.Qiu, A.S.Meyer, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.57 / 1.62
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 57.371, 57.371, 105.895, 90, 90, 90
R / Rfree (%) 14.8 / 17.3

Other elements in 7qfy:

The structure of Fusarium Oxysporum M36 Protease Without the Propeptide also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Fusarium Oxysporum M36 Protease Without the Propeptide (pdb code 7qfy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Fusarium Oxysporum M36 Protease Without the Propeptide, PDB code: 7qfy:

Zinc binding site 1 out of 1 in 7qfy

Go back to Zinc Binding Sites List in 7qfy
Zinc binding site 1 out of 1 in the Fusarium Oxysporum M36 Protease Without the Propeptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Fusarium Oxysporum M36 Protease Without the Propeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:10.5
occ:1.00
OE1 A:GLU214 2.0 14.3 1.0
NE2 A:HIS188 2.0 8.2 1.0
NE2 A:HIS184 2.0 8.3 1.0
CD A:GLU214 2.8 11.9 1.0
OE2 A:GLU214 3.0 12.1 1.0
CD2 A:HIS188 3.0 8.5 1.0
CE1 A:HIS188 3.0 12.0 1.0
CE1 A:HIS184 3.0 8.4 1.0
CD2 A:HIS184 3.0 8.8 1.0
HD2 A:HIS188 3.2 10.2 1.0
HE1 A:HIS188 3.2 14.4 1.0
HE1 A:HIS184 3.2 10.1 1.0
HD2 A:HIS184 3.2 10.6 1.0
HA A:GLU214 3.6 12.1 1.0
ND1 A:HIS188 4.1 7.7 1.0
CG A:HIS188 4.1 8.0 1.0
ND1 A:HIS184 4.1 8.2 1.0
CG A:HIS184 4.2 7.0 1.0
CG A:GLU214 4.2 10.6 1.0
NE2 A:HIS275 4.2 18.8 1.0
HD2 A:HIS275 4.2 24.6 1.0
OE1 A:GLU185 4.3 14.6 1.0
CA A:GLU214 4.4 10.1 1.0
HB3 A:GLU214 4.4 14.8 1.0
O A:HOH647 4.5 8.4 1.0
OE2 A:GLU185 4.5 22.7 1.0
CD2 A:HIS275 4.6 20.4 1.0
CB A:GLU214 4.6 12.4 1.0
O A:HOH659 4.6 24.7 1.0
HH22 A:ARG250 4.6 14.7 1.0
HG3 A:GLU214 4.7 12.7 1.0
CD A:GLU185 4.7 12.9 1.0
HG2 A:GLU214 4.7 12.7 1.0
HA A:GLU185 4.8 7.2 1.0
HD1 A:HIS188 4.9 9.2 1.0
HD1 A:HIS184 4.9 9.9 1.0

Reference:

C.Wilkens, J.Qiu, A.S.Meyer, J.P.Morth. Fusarium Oxysporum M36 Protease Without the Propeptide To Be Published.
Page generated: Sat Apr 8 01:56:05 2023

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