Zinc in PDB 7oob: Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
Enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
All present enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2):
2.7.7.6;
Other elements in 7oob:
The structure of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
(pdb code 7oob). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the
Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2), PDB code: 7oob:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Zinc binding site 1 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 1 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2001
b:106.1
occ:1.00
|
NE2
|
A:HIS84
|
2.0
|
23.6
|
1.0
|
|
SG
|
A:CYS74
|
2.2
|
32.5
|
1.0
|
|
SG
|
A:CYS81
|
2.2
|
28.4
|
1.0
|
|
SG
|
A:CYS71
|
2.3
|
35.4
|
1.0
|
|
HD2
|
A:HIS84
|
2.4
|
23.6
|
1.0
|
|
CD2
|
A:HIS84
|
2.5
|
23.6
|
1.0
|
|
HB2
|
A:CYS71
|
2.9
|
35.4
|
1.0
|
|
HA2
|
A:GLY63
|
2.9
|
29.9
|
1.0
|
|
CB
|
A:CYS71
|
2.9
|
35.4
|
1.0
|
|
HB3
|
A:CYS71
|
3.0
|
35.4
|
1.0
|
|
H
|
A:CYS74
|
3.2
|
32.5
|
1.0
|
|
CE1
|
A:HIS84
|
3.3
|
23.6
|
1.0
|
|
HB
|
A:THR73
|
3.6
|
30.5
|
1.0
|
|
HE1
|
A:HIS84
|
3.7
|
23.6
|
1.0
|
|
O
|
A:PRO82
|
3.7
|
22.3
|
1.0
|
|
CB
|
A:CYS81
|
3.8
|
28.4
|
1.0
|
|
CB
|
A:CYS74
|
3.8
|
32.5
|
1.0
|
|
CG
|
A:HIS84
|
3.8
|
23.6
|
1.0
|
|
HB2
|
A:CYS81
|
3.8
|
28.4
|
1.0
|
|
CA
|
A:GLY63
|
3.9
|
29.9
|
1.0
|
|
HB3
|
A:CYS74
|
3.9
|
32.5
|
1.0
|
|
N
|
A:CYS74
|
4.0
|
32.5
|
1.0
|
|
ND1
|
A:HIS84
|
4.1
|
23.6
|
1.0
|
|
HA
|
A:CYS81
|
4.3
|
28.4
|
1.0
|
|
H
|
A:THR73
|
4.3
|
30.5
|
1.0
|
|
HA3
|
A:GLY63
|
4.3
|
29.9
|
1.0
|
|
N
|
A:GLY63
|
4.4
|
29.9
|
1.0
|
|
H
|
A:GLY63
|
4.4
|
29.9
|
1.0
|
|
HD2
|
A:PRO82
|
4.4
|
22.3
|
1.0
|
|
HB3
|
A:CYS81
|
4.4
|
28.4
|
1.0
|
|
CA
|
A:CYS71
|
4.4
|
35.4
|
1.0
|
|
HB2
|
A:CYS74
|
4.4
|
32.5
|
1.0
|
|
H
|
A:GLY76
|
4.5
|
33.8
|
1.0
|
|
CA
|
A:CYS74
|
4.5
|
32.5
|
1.0
|
|
CA
|
A:CYS81
|
4.5
|
28.4
|
1.0
|
|
CB
|
A:THR73
|
4.5
|
30.5
|
1.0
|
|
HG23
|
A:VAL64
|
4.5
|
36.6
|
1.0
|
|
C
|
A:GLY63
|
4.6
|
29.9
|
1.0
|
|
HA
|
A:CYS71
|
4.7
|
35.4
|
1.0
|
|
H
|
A:ALA75
|
4.7
|
36.2
|
1.0
|
|
HA2
|
A:GLY83
|
4.7
|
21.3
|
1.0
|
|
C
|
A:PRO82
|
4.8
|
22.3
|
1.0
|
|
C
|
A:CYS81
|
4.8
|
28.4
|
1.0
|
|
H
|
A:HIS84
|
4.8
|
23.6
|
1.0
|
|
HG22
|
A:VAL64
|
4.9
|
36.6
|
1.0
|
|
HG1
|
A:THR73
|
4.9
|
30.5
|
1.0
|
|
OG1
|
A:THR73
|
5.0
|
30.5
|
1.0
|
|
HD1
|
A:HIS84
|
5.0
|
23.6
|
1.0
|
|
N
|
A:THR73
|
5.0
|
30.5
|
1.0
|
|
Zinc binding site 2 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 2 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2002
b:133.6
occ:1.00
|
SG
|
A:CYS184
|
2.1
|
81.1
|
1.0
|
|
SG
|
A:CYS111
|
2.3
|
73.2
|
1.0
|
|
SG
|
A:CYS154
|
2.3
|
84.6
|
1.0
|
|
HG
|
A:CYS114
|
2.3
|
73.9
|
1.0
|
|
HB2
|
A:CYS154
|
2.5
|
84.6
|
1.0
|
|
HB2
|
A:CYS114
|
2.6
|
73.9
|
1.0
|
|
CB
|
A:CYS154
|
2.7
|
84.6
|
1.0
|
|
H
|
A:CYS184
|
2.7
|
81.1
|
1.0
|
|
HB3
|
A:CYS154
|
2.7
|
84.6
|
1.0
|
|
H
|
A:CYS114
|
2.9
|
73.9
|
1.0
|
|
HB3
|
A:CYS184
|
3.0
|
81.1
|
1.0
|
|
SG
|
A:CYS114
|
3.0
|
73.9
|
1.0
|
|
CB
|
A:CYS184
|
3.1
|
81.1
|
1.0
|
|
CB
|
A:CYS114
|
3.2
|
73.9
|
1.0
|
|
N
|
A:CYS184
|
3.5
|
81.1
|
1.0
|
|
HB2
|
A:PHE113
|
3.5
|
74.3
|
1.0
|
|
HE22
|
A:GLN188
|
3.5
|
83.2
|
1.0
|
|
N
|
A:CYS114
|
3.6
|
73.9
|
1.0
|
|
CB
|
A:CYS111
|
3.7
|
73.2
|
1.0
|
|
HB2
|
A:CYS111
|
3.8
|
73.2
|
1.0
|
|
CA
|
A:CYS184
|
3.8
|
81.1
|
1.0
|
|
HB2
|
A:CYS184
|
3.9
|
81.1
|
1.0
|
|
HB3
|
A:CYS111
|
4.0
|
73.2
|
1.0
|
|
HB3
|
A:CYS114
|
4.0
|
73.9
|
1.0
|
|
HD2
|
A:PHE113
|
4.0
|
74.3
|
1.0
|
|
CA
|
A:CYS114
|
4.0
|
73.9
|
1.0
|
|
H
|
A:ARG186
|
4.1
|
84.7
|
1.0
|
|
H
|
A:GLY185
|
4.1
|
82.5
|
1.0
|
|
CA
|
A:CYS154
|
4.2
|
84.6
|
1.0
|
|
H
|
A:PHE113
|
4.2
|
74.3
|
1.0
|
|
NE2
|
A:GLN188
|
4.2
|
83.2
|
1.0
|
|
HB2
|
A:ARG186
|
4.3
|
84.7
|
1.0
|
|
C
|
A:CYS184
|
4.3
|
81.1
|
1.0
|
|
N
|
A:GLY185
|
4.4
|
82.5
|
1.0
|
|
HE21
|
A:GLN188
|
4.4
|
83.2
|
1.0
|
|
HA
|
A:CYS154
|
4.4
|
84.6
|
1.0
|
|
CB
|
A:PHE113
|
4.4
|
74.3
|
1.0
|
|
HA2
|
A:GLY183
|
4.6
|
72.5
|
1.0
|
|
C
|
A:GLY183
|
4.6
|
72.5
|
1.0
|
|
HA
|
A:CYS184
|
4.6
|
81.1
|
1.0
|
|
C
|
A:PHE113
|
4.7
|
74.3
|
1.0
|
|
H
|
A:CYS154
|
4.7
|
84.6
|
1.0
|
|
HA3
|
A:GLY183
|
4.7
|
72.5
|
1.0
|
|
HA
|
A:CYS114
|
4.7
|
73.9
|
1.0
|
|
HG3
|
A:ARG186
|
4.8
|
84.7
|
1.0
|
|
CD2
|
A:PHE113
|
4.8
|
74.3
|
1.0
|
|
N
|
A:ARG186
|
4.9
|
84.7
|
1.0
|
|
N
|
A:PHE113
|
4.9
|
74.3
|
1.0
|
|
HD3
|
A:ARG186
|
4.9
|
84.7
|
1.0
|
|
CA
|
A:GLY183
|
4.9
|
72.5
|
1.0
|
|
CA
|
A:PHE113
|
4.9
|
74.3
|
1.0
|
|
N
|
A:CYS154
|
4.9
|
84.6
|
1.0
|
|
H
|
A:SER115
|
4.9
|
65.5
|
1.0
|
|
C
|
A:CYS154
|
5.0
|
84.6
|
1.0
|
|
HB3
|
A:PHE113
|
5.0
|
74.3
|
1.0
|
|
CA
|
A:CYS111
|
5.0
|
73.2
|
1.0
|
|
Zinc binding site 3 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 3 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1201
b:145.6
occ:1.00
|
SG
|
B:CYS1122
|
2.3
|
24.1
|
1.0
|
|
SG
|
B:CYS1119
|
2.3
|
27.1
|
1.0
|
|
SG
|
B:CYS1137
|
2.3
|
39.0
|
1.0
|
|
SG
|
B:CYS1140
|
2.3
|
44.4
|
1.0
|
|
HB2
|
B:CYS1140
|
2.7
|
44.4
|
1.0
|
|
HB3
|
B:CYS1119
|
2.8
|
27.1
|
1.0
|
|
HB2
|
B:CYS1119
|
2.8
|
27.1
|
1.0
|
|
CB
|
B:CYS1119
|
2.8
|
27.1
|
1.0
|
|
HB3
|
B:CYS1137
|
2.9
|
39.0
|
1.0
|
|
H
|
B:CYS1140
|
2.9
|
44.4
|
1.0
|
|
CB
|
B:CYS1137
|
3.1
|
39.0
|
1.0
|
|
CB
|
B:CYS1140
|
3.1
|
44.4
|
1.0
|
|
H
|
B:CYS1122
|
3.2
|
24.1
|
1.0
|
|
HB2
|
B:CYS1137
|
3.2
|
39.0
|
1.0
|
|
HB3
|
B:CYS1122
|
3.5
|
24.1
|
1.0
|
|
CB
|
B:CYS1122
|
3.6
|
24.1
|
1.0
|
|
N
|
B:CYS1140
|
3.6
|
44.4
|
1.0
|
|
HB2
|
B:LEU1121
|
3.8
|
31.1
|
1.0
|
|
HB3
|
B:CYS1140
|
3.8
|
44.4
|
1.0
|
|
N
|
B:CYS1122
|
4.0
|
24.1
|
1.0
|
|
CA
|
B:CYS1140
|
4.0
|
44.4
|
1.0
|
|
OD1
|
B:ASN1142
|
4.1
|
45.0
|
1.0
|
|
HB2
|
B:CYS1122
|
4.3
|
24.1
|
1.0
|
|
CA
|
B:CYS1119
|
4.3
|
27.1
|
1.0
|
|
CA
|
B:CYS1122
|
4.4
|
24.1
|
1.0
|
|
HA3
|
B:GLY1139
|
4.4
|
40.9
|
1.0
|
|
H
|
B:LEU1121
|
4.4
|
31.1
|
1.0
|
|
CA
|
B:CYS1137
|
4.5
|
39.0
|
1.0
|
|
HA
|
B:CYS1140
|
4.5
|
44.4
|
1.0
|
|
C
|
B:GLY1139
|
4.6
|
40.9
|
1.0
|
|
H
|
B:ILE1124
|
4.6
|
19.8
|
1.0
|
|
HD21
|
B:ASN1142
|
4.7
|
45.0
|
1.0
|
|
CB
|
B:LEU1121
|
4.7
|
31.1
|
1.0
|
|
HA
|
B:CYS1119
|
4.7
|
27.1
|
1.0
|
|
H
|
B:GLY1139
|
4.7
|
40.9
|
1.0
|
|
HD12
|
B:LEU1121
|
4.8
|
31.1
|
1.0
|
|
HB
|
B:ILE1124
|
4.8
|
19.8
|
1.0
|
|
H
|
B:GLY1123
|
4.8
|
19.9
|
1.0
|
|
HA
|
B:CYS1137
|
4.9
|
39.0
|
1.0
|
|
CG
|
B:ASN1142
|
4.9
|
45.0
|
1.0
|
|
CA
|
B:GLY1139
|
4.9
|
40.9
|
1.0
|
|
H
|
B:CYS1119
|
4.9
|
27.1
|
1.0
|
|
C
|
B:CYS1137
|
5.0
|
39.0
|
1.0
|
|
C
|
B:CYS1119
|
5.0
|
27.1
|
1.0
|
|
Zinc binding site 4 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 4 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn301
b:116.6
occ:1.00
|
SG
|
C:CYS97
|
2.2
|
15.3
|
1.0
|
|
SG
|
C:CYS90
|
2.2
|
37.8
|
1.0
|
|
SG
|
C:CYS88
|
2.3
|
26.3
|
1.0
|
|
SG
|
C:CYS94
|
2.3
|
19.8
|
1.0
|
|
HB3
|
C:CYS88
|
2.8
|
26.3
|
1.0
|
|
HB3
|
C:CYS97
|
2.8
|
15.3
|
1.0
|
|
CB
|
C:CYS88
|
3.0
|
26.3
|
1.0
|
|
CB
|
C:CYS97
|
3.1
|
15.3
|
1.0
|
|
HB2
|
C:CYS88
|
3.2
|
26.3
|
1.0
|
|
CB
|
C:CYS94
|
3.5
|
19.8
|
1.0
|
|
HB3
|
C:CYS90
|
3.5
|
37.8
|
1.0
|
|
H
|
C:CYS94
|
3.5
|
19.8
|
1.0
|
|
HB3
|
C:CYS94
|
3.5
|
19.8
|
1.0
|
|
CB
|
C:CYS90
|
3.6
|
37.8
|
1.0
|
|
N
|
C:CYS94
|
3.6
|
19.8
|
1.0
|
|
H
|
C:CYS97
|
3.6
|
15.3
|
1.0
|
|
HB2
|
C:CYS97
|
3.8
|
15.3
|
1.0
|
|
H
|
C:CYS90
|
3.9
|
37.8
|
1.0
|
|
HA
|
C:PHE93
|
4.0
|
19.8
|
1.0
|
|
N
|
C:CYS97
|
4.0
|
15.3
|
1.0
|
|
CA
|
C:CYS94
|
4.0
|
19.8
|
1.0
|
|
C
|
C:PHE93
|
4.0
|
19.8
|
1.0
|
|
CA
|
C:CYS97
|
4.1
|
15.3
|
1.0
|
|
HB2
|
C:CYS90
|
4.1
|
37.8
|
1.0
|
|
HB2
|
C:GLU96
|
4.2
|
18.8
|
1.0
|
|
O
|
C:CYS94
|
4.2
|
19.8
|
1.0
|
|
HG
|
C:SER85
|
4.2
|
15.4
|
1.0
|
|
HB2
|
C:CYS94
|
4.3
|
19.8
|
1.0
|
|
HA
|
C:SER85
|
4.3
|
15.4
|
1.0
|
|
CA
|
C:CYS88
|
4.4
|
26.3
|
1.0
|
|
C
|
C:CYS94
|
4.4
|
19.8
|
1.0
|
|
CA
|
C:PHE93
|
4.5
|
19.8
|
1.0
|
|
H
|
C:GLU96
|
4.5
|
18.8
|
1.0
|
|
O
|
C:PHE93
|
4.6
|
19.8
|
1.0
|
|
O
|
C:GLU91
|
4.6
|
41.8
|
1.0
|
|
N
|
C:CYS90
|
4.6
|
37.8
|
1.0
|
|
CA
|
C:CYS90
|
4.6
|
37.8
|
1.0
|
|
HA
|
C:CYS88
|
4.7
|
26.3
|
1.0
|
|
C
|
C:GLU96
|
4.8
|
18.8
|
1.0
|
|
C
|
C:CYS97
|
4.9
|
15.3
|
1.0
|
|
HA
|
C:CYS97
|
4.9
|
15.3
|
1.0
|
|
C
|
C:CYS88
|
4.9
|
26.3
|
1.0
|
|
HA
|
C:CYS94
|
4.9
|
19.8
|
1.0
|
|
Zinc binding site 5 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 5 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:147.2
occ:1.00
|
HB2
|
I:CYS17
|
2.0
|
62.5
|
1.0
|
|
SG
|
I:CYS20
|
2.3
|
61.0
|
1.0
|
|
SG
|
I:CYS42
|
2.3
|
73.5
|
1.0
|
|
SG
|
I:CYS17
|
2.3
|
62.5
|
1.0
|
|
SG
|
I:CYS39
|
2.3
|
69.8
|
1.0
|
|
HB2
|
I:CYS39
|
2.3
|
69.8
|
1.0
|
|
CB
|
I:CYS17
|
2.4
|
62.5
|
1.0
|
|
HB3
|
I:CYS17
|
2.5
|
62.5
|
1.0
|
|
HB3
|
I:CYS39
|
2.5
|
69.8
|
1.0
|
|
CB
|
I:CYS39
|
2.5
|
69.8
|
1.0
|
|
H
|
I:CYS42
|
3.2
|
73.5
|
1.0
|
|
H
|
I:CYS20
|
3.4
|
61.0
|
1.0
|
|
HB3
|
I:TYR44
|
3.4
|
69.6
|
1.0
|
|
HB3
|
I:CYS42
|
3.5
|
73.5
|
1.0
|
|
CB
|
I:CYS42
|
3.5
|
73.5
|
1.0
|
|
CA
|
I:CYS17
|
3.8
|
62.5
|
1.0
|
|
CB
|
I:CYS20
|
3.9
|
61.0
|
1.0
|
|
N
|
I:CYS42
|
4.0
|
73.5
|
1.0
|
|
HB2
|
I:ASN22
|
4.0
|
54.4
|
1.0
|
|
CA
|
I:CYS39
|
4.0
|
69.8
|
1.0
|
|
H
|
I:ASN22
|
4.1
|
54.4
|
1.0
|
|
HD23
|
I:LEU24
|
4.1
|
63.4
|
1.0
|
|
H
|
I:TYR44
|
4.1
|
69.6
|
1.0
|
|
HA
|
I:CYS17
|
4.1
|
62.5
|
1.0
|
|
HB2
|
I:TYR44
|
4.1
|
69.6
|
1.0
|
|
HB3
|
I:CYS20
|
4.2
|
61.0
|
1.0
|
|
N
|
I:CYS20
|
4.2
|
61.0
|
1.0
|
|
HB3
|
I:ASN41
|
4.2
|
68.4
|
1.0
|
|
CB
|
I:TYR44
|
4.2
|
69.6
|
1.0
|
|
H
|
I:GLU19
|
4.2
|
65.7
|
1.0
|
|
HD21
|
I:LEU24
|
4.3
|
63.4
|
1.0
|
|
CA
|
I:CYS42
|
4.3
|
73.5
|
1.0
|
|
H
|
I:CYS17
|
4.3
|
62.5
|
1.0
|
|
HB2
|
I:CYS42
|
4.3
|
73.5
|
1.0
|
|
HB2
|
I:GLU19
|
4.3
|
65.7
|
1.0
|
|
HA
|
I:CYS39
|
4.4
|
69.8
|
1.0
|
|
HD2
|
I:TYR44
|
4.4
|
69.6
|
1.0
|
|
H
|
I:ASN41
|
4.5
|
68.4
|
1.0
|
|
H
|
I:CYS39
|
4.6
|
69.8
|
1.0
|
|
HB2
|
I:CYS20
|
4.6
|
61.0
|
1.0
|
|
CA
|
I:CYS20
|
4.6
|
61.0
|
1.0
|
|
N
|
I:CYS17
|
4.6
|
62.5
|
1.0
|
|
H
|
I:ASN21
|
4.6
|
54.1
|
1.0
|
|
CD2
|
I:LEU24
|
4.6
|
63.4
|
1.0
|
|
C
|
I:CYS42
|
4.7
|
73.5
|
1.0
|
|
O
|
I:ASN22
|
4.7
|
54.4
|
1.0
|
|
C
|
I:CYS17
|
4.7
|
62.5
|
1.0
|
|
N
|
I:CYS39
|
4.8
|
69.8
|
1.0
|
|
C
|
I:CYS39
|
4.8
|
69.8
|
1.0
|
|
N
|
I:ASN22
|
4.8
|
54.4
|
1.0
|
|
N
|
I:TYR44
|
4.9
|
69.6
|
1.0
|
|
H
|
I:GLN18
|
4.9
|
66.3
|
1.0
|
|
CB
|
I:ASN22
|
4.9
|
54.4
|
1.0
|
|
N
|
I:ASN21
|
5.0
|
54.1
|
1.0
|
|
HG2
|
I:GLU19
|
5.0
|
65.7
|
1.0
|
|
O
|
I:CYS42
|
5.0
|
73.5
|
1.0
|
|
Zinc binding site 6 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 6 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:141.5
occ:1.00
|
SG
|
I:CYS89
|
2.2
|
39.0
|
1.0
|
|
SG
|
I:CYS86
|
2.3
|
33.2
|
1.0
|
|
SG
|
I:CYS119
|
2.3
|
41.4
|
1.0
|
|
SG
|
I:CYS114
|
2.3
|
27.0
|
1.0
|
|
HB2
|
I:CYS114
|
2.5
|
27.0
|
1.0
|
|
HB3
|
I:CYS114
|
2.6
|
27.0
|
1.0
|
|
CB
|
I:CYS114
|
2.6
|
27.0
|
1.0
|
|
HB2
|
I:CYS86
|
3.0
|
33.2
|
1.0
|
|
CB
|
I:CYS86
|
3.1
|
33.2
|
1.0
|
|
HB3
|
I:HIS121
|
3.1
|
28.4
|
1.0
|
|
HB3
|
I:CYS86
|
3.2
|
33.2
|
1.0
|
|
H
|
I:HIS121
|
3.4
|
28.4
|
1.0
|
|
HB3
|
I:CYS89
|
3.4
|
39.0
|
1.0
|
|
HB3
|
I:CYS119
|
3.5
|
41.4
|
1.0
|
|
CB
|
I:CYS89
|
3.5
|
39.0
|
1.0
|
|
CB
|
I:CYS119
|
3.5
|
41.4
|
1.0
|
|
H
|
I:CYS89
|
3.6
|
39.0
|
1.0
|
|
HB2
|
I:HIS121
|
3.7
|
28.4
|
1.0
|
|
CB
|
I:HIS121
|
3.8
|
28.4
|
1.0
|
|
HB3
|
I:LYS88
|
3.9
|
35.7
|
1.0
|
|
HB3
|
I:ALA116
|
3.9
|
35.6
|
1.0
|
|
HB2
|
I:CYS119
|
3.9
|
41.4
|
1.0
|
|
N
|
I:CYS89
|
4.1
|
39.0
|
1.0
|
|
CA
|
I:CYS114
|
4.1
|
27.0
|
1.0
|
|
N
|
I:HIS121
|
4.2
|
28.4
|
1.0
|
|
HB2
|
I:CYS89
|
4.2
|
39.0
|
1.0
|
|
HB3
|
I:HIS91
|
4.3
|
32.6
|
1.0
|
|
HB2
|
I:HIS91
|
4.3
|
32.6
|
1.0
|
|
H
|
I:HIS91
|
4.3
|
32.6
|
1.0
|
|
CA
|
I:CYS89
|
4.4
|
39.0
|
1.0
|
|
HZ3
|
I:TRP123
|
4.4
|
24.3
|
1.0
|
|
H
|
I:LYS88
|
4.4
|
35.7
|
1.0
|
|
HA
|
I:CYS114
|
4.5
|
27.0
|
1.0
|
|
HG2
|
I:LYS88
|
4.5
|
35.7
|
1.0
|
|
H
|
I:GLY120
|
4.5
|
30.9
|
1.0
|
|
CA
|
I:CYS86
|
4.5
|
33.2
|
1.0
|
|
H
|
I:ALA116
|
4.6
|
35.6
|
1.0
|
|
CA
|
I:HIS121
|
4.6
|
28.4
|
1.0
|
|
HB2
|
I:ALA116
|
4.7
|
35.6
|
1.0
|
|
H
|
I:CYS114
|
4.7
|
27.0
|
1.0
|
|
H
|
I:GLY90
|
4.7
|
35.1
|
1.0
|
|
CB
|
I:ALA116
|
4.7
|
35.6
|
1.0
|
|
N
|
I:GLY120
|
4.7
|
30.9
|
1.0
|
|
CB
|
I:LYS88
|
4.7
|
35.7
|
1.0
|
|
CB
|
I:HIS91
|
4.8
|
32.6
|
1.0
|
|
HD2
|
I:HIS121
|
4.8
|
28.4
|
1.0
|
|
HA
|
I:CYS86
|
4.8
|
33.2
|
1.0
|
|
CA
|
I:CYS119
|
4.8
|
41.4
|
1.0
|
|
C
|
I:CYS119
|
4.8
|
41.4
|
1.0
|
|
C
|
I:CYS114
|
4.9
|
27.0
|
1.0
|
|
CG
|
I:HIS121
|
4.9
|
28.4
|
1.0
|
|
C
|
I:LYS88
|
4.9
|
35.7
|
1.0
|
|
N
|
I:CYS114
|
4.9
|
27.0
|
1.0
|
|
Zinc binding site 7 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 7 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:16.6
occ:1.00
|
SG
|
J:CYS10
|
2.2
|
11.3
|
1.0
|
|
SG
|
J:CYS44
|
2.2
|
11.3
|
1.0
|
|
SG
|
J:CYS7
|
2.3
|
11.3
|
1.0
|
|
SG
|
J:CYS45
|
2.3
|
11.3
|
1.0
|
|
HB3
|
J:CYS7
|
2.9
|
11.3
|
1.0
|
|
H
|
J:CYS10
|
3.0
|
11.3
|
1.0
|
|
CB
|
J:CYS7
|
3.0
|
11.3
|
1.0
|
|
HB2
|
J:CYS7
|
3.2
|
11.3
|
1.0
|
|
H
|
J:CYS45
|
3.2
|
11.3
|
1.0
|
|
HB2
|
J:CYS44
|
3.3
|
11.3
|
1.0
|
|
N
|
J:CYS45
|
3.4
|
11.3
|
1.0
|
|
HB3
|
J:CYS10
|
3.4
|
11.3
|
1.0
|
|
HE
|
J:ARG42
|
3.4
|
7.9
|
1.0
|
|
CB
|
J:CYS10
|
3.4
|
11.3
|
1.0
|
|
CB
|
J:CYS44
|
3.4
|
11.3
|
1.0
|
|
HB
|
J:THR9
|
3.6
|
11.3
|
1.0
|
|
CB
|
J:CYS45
|
3.7
|
11.3
|
1.0
|
|
HA
|
J:CYS45
|
3.7
|
11.3
|
1.0
|
|
N
|
J:CYS10
|
3.8
|
11.3
|
1.0
|
|
CA
|
J:CYS45
|
3.8
|
11.3
|
1.0
|
|
C
|
J:CYS44
|
3.9
|
11.3
|
1.0
|
|
HB3
|
J:LYS12
|
3.9
|
11.3
|
1.0
|
|
HB2
|
J:ARG42
|
4.0
|
7.9
|
1.0
|
|
H
|
J:LYS12
|
4.1
|
11.3
|
1.0
|
|
HB3
|
J:CYS45
|
4.1
|
11.3
|
1.0
|
|
HH21
|
J:ARG42
|
4.1
|
7.9
|
1.0
|
|
HB2
|
J:CYS10
|
4.2
|
11.3
|
1.0
|
|
HB3
|
J:CYS44
|
4.2
|
11.3
|
1.0
|
|
CA
|
J:CYS10
|
4.2
|
11.3
|
1.0
|
|
CA
|
J:CYS44
|
4.2
|
11.3
|
1.0
|
|
NE
|
J:ARG42
|
4.2
|
7.9
|
1.0
|
|
H
|
J:GLY11
|
4.3
|
11.3
|
1.0
|
|
H
|
J:THR9
|
4.3
|
11.3
|
1.0
|
|
HB2
|
J:CYS45
|
4.3
|
11.3
|
1.0
|
|
HB2
|
J:LYS12
|
4.3
|
11.3
|
1.0
|
|
CA
|
J:CYS7
|
4.5
|
11.3
|
1.0
|
|
HB3
|
J:ARG42
|
4.5
|
7.9
|
1.0
|
|
CB
|
J:THR9
|
4.6
|
11.3
|
1.0
|
|
O
|
J:CYS44
|
4.6
|
11.3
|
1.0
|
|
CB
|
J:LYS12
|
4.6
|
11.3
|
1.0
|
|
HD2
|
J:ARG42
|
4.6
|
7.9
|
1.0
|
|
H
|
J:CYS44
|
4.7
|
11.3
|
1.0
|
|
HG22
|
J:THR9
|
4.7
|
11.3
|
1.0
|
|
CB
|
J:ARG42
|
4.7
|
7.9
|
1.0
|
|
HH21
|
J:ARG47
|
4.8
|
11.3
|
1.0
|
|
N
|
J:GLY11
|
4.8
|
11.3
|
1.0
|
|
NH2
|
J:ARG42
|
4.9
|
7.9
|
1.0
|
|
C
|
J:THR9
|
4.9
|
11.3
|
1.0
|
|
N
|
J:CYS44
|
4.9
|
11.3
|
1.0
|
|
N
|
J:LYS12
|
4.9
|
11.3
|
1.0
|
|
HA
|
J:CYS7
|
4.9
|
11.3
|
1.0
|
|
HD3
|
J:LYS12
|
4.9
|
11.3
|
1.0
|
|
HG3
|
J:MET48
|
4.9
|
11.3
|
1.0
|
|
N
|
J:THR9
|
5.0
|
11.3
|
1.0
|
|
C
|
J:CYS7
|
5.0
|
11.3
|
1.0
|
|
C
|
J:CYS10
|
5.0
|
11.3
|
1.0
|
|
HA
|
J:CYS10
|
5.0
|
11.3
|
1.0
|
|
CD
|
J:ARG42
|
5.0
|
7.9
|
1.0
|
|
Zinc binding site 8 out
of 8 in 7oob
Go back to
Zinc Binding Sites List in 7oob
Zinc binding site 8 out
of 8 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:143.8
occ:1.00
|
SG
|
L:CYS36
|
2.2
|
48.4
|
1.0
|
|
SG
|
L:CYS22
|
2.2
|
49.3
|
1.0
|
|
SG
|
L:CYS39
|
2.3
|
52.2
|
1.0
|
|
SG
|
L:CYS19
|
2.3
|
41.4
|
1.0
|
|
HB3
|
L:CYS36
|
2.6
|
48.4
|
1.0
|
|
CB
|
L:CYS36
|
2.8
|
48.4
|
1.0
|
|
HB2
|
L:CYS19
|
2.9
|
41.4
|
1.0
|
|
HB2
|
L:CYS36
|
2.9
|
48.4
|
1.0
|
|
CB
|
L:CYS19
|
3.1
|
41.4
|
1.0
|
|
HB3
|
L:CYS22
|
3.1
|
49.3
|
1.0
|
|
H
|
L:CYS39
|
3.1
|
52.2
|
1.0
|
|
H
|
L:CYS22
|
3.3
|
49.3
|
1.0
|
|
CB
|
L:CYS22
|
3.3
|
49.3
|
1.0
|
|
HB3
|
L:CYS19
|
3.3
|
41.4
|
1.0
|
|
H
|
L:TYR41
|
3.5
|
36.1
|
1.0
|
|
HB3
|
L:TYR41
|
3.5
|
36.1
|
1.0
|
|
CB
|
L:CYS39
|
3.6
|
52.2
|
1.0
|
|
HB3
|
L:GLU38
|
3.6
|
58.2
|
1.0
|
|
N
|
L:CYS39
|
3.7
|
52.2
|
1.0
|
|
HB2
|
L:TYR41
|
3.8
|
36.1
|
1.0
|
|
HB3
|
L:CYS39
|
3.8
|
52.2
|
1.0
|
|
N
|
L:CYS22
|
4.0
|
49.3
|
1.0
|
|
HB2
|
L:CYS22
|
4.0
|
49.3
|
1.0
|
|
CB
|
L:TYR41
|
4.1
|
36.1
|
1.0
|
|
H
|
L:GLU38
|
4.1
|
58.2
|
1.0
|
|
CA
|
L:CYS39
|
4.1
|
52.2
|
1.0
|
|
H
|
L:GLY40
|
4.1
|
45.4
|
1.0
|
|
OE1
|
L:GLU38
|
4.1
|
58.2
|
1.0
|
|
CA
|
L:CYS22
|
4.2
|
49.3
|
1.0
|
|
HB
|
L:THR24
|
4.2
|
51.1
|
1.0
|
|
HB3
|
L:GLU21
|
4.3
|
41.7
|
1.0
|
|
CA
|
L:CYS36
|
4.3
|
48.4
|
1.0
|
|
N
|
L:TYR41
|
4.3
|
36.1
|
1.0
|
|
HB2
|
L:CYS39
|
4.4
|
52.2
|
1.0
|
|
N
|
L:GLY40
|
4.4
|
45.4
|
1.0
|
|
HG1
|
L:THR24
|
4.5
|
51.1
|
1.0
|
|
C
|
L:CYS39
|
4.5
|
52.2
|
1.0
|
|
H
|
L:GLU21
|
4.5
|
41.7
|
1.0
|
|
CA
|
L:CYS19
|
4.5
|
41.4
|
1.0
|
|
CB
|
L:GLU38
|
4.5
|
58.2
|
1.0
|
|
H
|
L:THR24
|
4.6
|
51.1
|
1.0
|
|
C
|
L:GLU38
|
4.6
|
58.2
|
1.0
|
|
HA
|
L:CYS19
|
4.7
|
41.4
|
1.0
|
|
HA
|
L:CYS36
|
4.7
|
48.4
|
1.0
|
|
HD21
|
L:ASN26
|
4.7
|
53.1
|
1.0
|
|
OG1
|
L:THR24
|
4.7
|
51.1
|
1.0
|
|
N
|
L:GLU38
|
4.7
|
58.2
|
1.0
|
|
C
|
L:CYS36
|
4.8
|
48.4
|
1.0
|
|
H
|
L:HIS23
|
4.8
|
46.6
|
1.0
|
|
CA
|
L:TYR41
|
4.8
|
36.1
|
1.0
|
|
CA
|
L:GLU38
|
4.9
|
58.2
|
1.0
|
|
C
|
L:CYS22
|
4.9
|
49.3
|
1.0
|
|
H
|
L:CYS36
|
4.9
|
48.4
|
1.0
|
|
CB
|
L:THR24
|
5.0
|
51.1
|
1.0
|
|
HA
|
L:CYS22
|
5.0
|
49.3
|
1.0
|
|
HD2
|
L:TYR41
|
5.0
|
36.1
|
1.0
|
|
Reference:
G.Kokic,
F.R.Wagner,
A.Chernev,
H.Urlaub,
P.Cramer.
Structural Basis of Human Transcription-Dna Repair Coupling. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34526721
DOI: 10.1038/S41586-021-03906-4
Page generated: Wed Oct 30 08:38:44 2024
|
