Zinc in PDB 7nav: Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement)

The structure of Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement) also contains other interesting chemical elements:

Magnesium

(Mg)

37 atoms

The binding sites of Zinc atom in the Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement) (pdb code 7nav). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement), PDB code: 7nav:

Zinc binding site 1 out of 1 in the Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bacterial 30S Ribosomal Subunit Assembly Complex State D (Consensus Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:140.6 occ:1.00 NE2 B:HIS18 2.1 117.0 1.0 OD1 B:ASP204 2.2 101.4 1.0 OD2 B:ASP204 2.4 92.2 1.0 CG B:ASP204 2.6 97.0 1.0 OD2 B:ASP188 2.7 94.9 1.0 CB B:ASP188 3.1 92.1 1.0 CE1 B:HIS18 3.1 116.5 1.0 CD2 B:HIS18 3.1 116.4 1.0 CG B:ASP188 3.3 94.1 1.0 OD1 B:ASN190 3.6 114.2 1.0 OD1 B:ASP205 3.6 102.8 1.0 OD1 B:ASP165 3.8 94.6 1.0 OD2 B:ASP205 4.1 103.8 1.0 CG B:ASP165 4.1 93.5 1.0 CB B:ASP204 4.1 94.1 1.0 CG B:ASP205 4.2 100.7 1.0 ND1 B:HIS18 4.2 116.3 1.0 CG B:HIS18 4.2 115.9 1.0 OD2 B:ASP165 4.3 92.6 1.0 CG B:ASN190 4.3 114.4 1.0 OD1 B:ASP188 4.5 94.0 1.0 ND2 B:ASN190 4.5 114.5 1.0 CA B:ASP188 4.6 92.8 1.0 N B:ASP204 4.7 101.4 1.0 CA B:ASP204 4.9 95.0 1.0 CB B:ASP165 4.9 98.0 1.0

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547