Zinc in PDB 7kin: Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter

Enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter

All present enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter:
2.7.7.6;

Other elements in 7kin:

The structure of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter (pdb code 7kin). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter, PDB code: 7kin:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7kin

Go back to Zinc Binding Sites List in 7kin
Zinc binding site 1 out of 2 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2000

b:93.7
occ:1.00
SG D:CYS978 2.4 72.2 1.0
SG D:CYS891 2.4 82.6 1.0
SG D:CYS968 2.4 77.1 1.0
SG D:CYS975 2.5 69.5 1.0
CB D:CYS978 3.3 72.2 1.0
CB D:CYS891 3.4 82.6 1.0
CB D:CYS968 3.6 77.1 1.0
CB D:CYS975 3.7 69.5 1.0
CA D:CYS968 3.8 77.1 1.0
N D:ALA969 4.0 78.9 1.0
N D:CYS891 4.2 82.6 1.0
OG1 D:THR970 4.3 79.2 1.0
CA D:CYS891 4.4 82.6 1.0
NH2 D:ARG963 4.4 75.8 1.0
N D:CYS975 4.4 69.5 1.0
C D:CYS968 4.4 77.1 1.0
CA D:CYS978 4.4 72.2 1.0
N D:CYS978 4.5 72.2 1.0
CA D:CYS975 4.6 69.5 1.0
CG2 D:THR893 4.7 86.3 1.0
N D:THR970 4.9 79.2 1.0

Zinc binding site 2 out of 2 in 7kin

Go back to Zinc Binding Sites List in 7kin
Zinc binding site 2 out of 2 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2001

b:120.4
occ:1.00
SG D:CYS60 2.4 102.8 1.0
SG D:CYS75 2.4 107.3 1.0
SG D:CYS78 2.4 103.8 1.0
SG D:CYS62 2.5 103.7 1.0
CB D:CYS75 2.8 107.3 1.0
CB D:CYS60 2.9 102.8 1.0
N D:CYS62 3.7 103.7 1.0
N D:TYR61 3.8 99.3 1.0
CB D:CYS78 3.9 103.8 1.0
CB D:CYS62 4.0 103.7 1.0
N D:CYS78 4.2 103.8 1.0
CA D:CYS60 4.2 102.8 1.0
CA D:CYS62 4.3 103.7 1.0
CA D:CYS75 4.3 107.3 1.0
C D:CYS60 4.4 102.8 1.0
CB D:LYS64 4.4 109.0 1.0
N D:LYS64 4.6 109.0 1.0
CA D:CYS78 4.6 103.8 1.0
N D:GLY63 4.6 107.9 1.0
C D:TYR61 4.7 99.3 1.0
CA D:TYR61 4.7 99.3 1.0
CD1 D:TYR65 4.7 109.1 1.0
C D:CYS62 4.7 103.7 1.0
CB D:ARG77 4.9 111.7 1.0

Reference:

M.Lilic, S.A.Darst, E.A.Campbell. Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Promoter To Be Published.
Page generated: Tue Oct 29 22:17:24 2024

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