Zinc in PDB 7kef: Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Enzymatic activity of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
All present enzymatic activity of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State:
2.7.7.6;
2.7.7.6;
Protein crystallography data
The structure of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State, PDB code: 7kef
was solved by
J.Oh,
D.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.70 / 3.89 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 167.713, 221.711, 193.255, 90, 101.78, 90 |
| R / Rfree (%) | 26.8 / 32.6 |
Other elements in 7kef:
The structure of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
Zinc Binding Sites:
The binding sites of Zinc atom in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
(pdb code 7kef). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State, PDB code: 7kef:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Zinc where determined in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State, PDB code: 7kef:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Zinc binding site 1 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 1 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 2 out of 8 in 7kef
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Zinc Binding Sites List in 7kef
Zinc binding site 2 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 3 out of 8 in 7kef
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Zinc Binding Sites List in 7kef
Zinc binding site 3 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 4 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 4 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 5 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 5 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 6 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 6 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 7 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 7 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Zinc binding site 8 out of 8 in 7kef
Go back to
Zinc Binding Sites List in 7kef
Zinc binding site 8 out
of 8 in the Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Rna Polymerase II Elongation Complex with Unnatural Base DTPT3, Rnam in Swing State within 5.0Å range:
|
Reference:
J.Oh,
W.Wang,
D.Wang.
Transcriptional Processing of Unnatural Base Pair By Eukaryotic Rna Polymerase II Nat.Chem.Biol. 2021.
ISSN: ESSN 1552-4469
DOI: 10.1038/S41589-021-00817-3
Page generated: Mon Jul 12 17:17:15 2021
ISSN: ESSN 1552-4469
DOI: 10.1038/S41589-021-00817-3
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