Zinc in PDB 7jjb: Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca

The structure of Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca, PDB code: 7jjb was solved by Z.Luo, J.R.More, B.Kobe, C.A.Mcdevitt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.72 / 1.10
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	44.251, 50.091, 87.215, 90.00, 90.00, 90.00
R / Rfree (%)	14.7 / 16.7

The structure of Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	6 atoms

The binding sites of Zinc atom in the Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca (pdb code 7jjb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca, PDB code: 7jjb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:9.2 occ:0.60 NE2 A:HIS131 2.0 11.9 0.7 O A:HOH504 2.0 21.9 1.0 NE2 A:HIS142 2.1 8.6 0.6 NE2 A:HIS140 2.1 14.0 1.0 O A:HOH303 2.1 14.1 0.6 CE1 A:HIS142 2.9 8.2 0.6 CD2 A:HIS131 3.0 11.7 0.7 CE1 A:HIS131 3.0 12.1 0.7 HE1 A:HIS142 3.1 9.9 0.6 CE1 A:HIS140 3.1 14.0 1.0 CD2 A:HIS140 3.1 12.9 1.0 CD2 A:HIS142 3.1 7.3 0.6 HD2 A:HIS131 3.1 14.0 0.7 HE1 A:HIS131 3.2 14.6 0.7 HE1 A:HIS140 3.2 16.8 1.0 NE2 A:HIS142 3.3 10.4 0.4 HD2 A:HIS140 3.3 15.5 1.0 HD2 A:HIS142 3.4 8.8 0.6 HE1 A:HIS142 3.4 11.3 0.4 NE2 A:HIS131 3.4 12.1 0.3 CE1 A:HIS142 3.5 9.4 0.4 O A:HOH524 3.5 30.1 1.0 ZN A:ZN202 3.6 12.3 0.4 O A:HOH337 3.7 25.5 1.0 CE1 A:HIS131 3.7 12.9 0.3 CD2 A:HIS131 3.8 11.9 0.3 HE1 A:HIS131 4.0 15.4 0.3 ND1 A:HIS131 4.1 12.4 0.7 CG A:HIS131 4.1 12.0 0.7 ND1 A:HIS142 4.1 7.0 0.6 HD2 A:HIS131 4.1 14.3 0.3 CD2 A:HIS142 4.2 9.0 0.4 O A:HOH329 4.2 12.9 1.0 ND1 A:HIS140 4.2 14.4 1.0 CG A:HIS142 4.2 6.9 0.6 CG A:HIS140 4.2 12.2 1.0 ND1 A:HIS131 4.3 12.4 0.3 CG A:HIS131 4.3 9.9 0.3 ND1 A:HIS142 4.4 7.8 0.4 O A:HOH571 4.5 31.4 1.0 HA A:ASP130 4.5 8.8 1.0 HD2 A:HIS142 4.6 10.8 0.4 O A:HOH512 4.6 32.3 1.0 CG A:HIS142 4.8 7.4 0.4 HD1 A:HIS131 4.8 14.9 0.3 HD1 A:HIS142 4.8 8.4 0.6 HD1 A:HIS131 4.8 14.9 0.7 HG23 A:THR162 4.9 8.3 1.0 HD1 A:HIS142 4.9 9.4 0.4 HD1 A:HIS140 5.0 17.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:12.3 occ:0.40 O A:HOH303 1.6 14.1 0.6 HE1 A:HIS131 1.8 14.6 0.7 NE2 A:HIS142 2.1 10.4 0.4 NE2 A:HIS131 2.1 12.1 0.3 O A:HOH516 2.3 34.3 1.0 O A:HOH524 2.3 30.1 1.0 CE1 A:HIS131 2.6 12.1 0.7 CE1 A:HIS131 2.9 12.9 0.3 HE1 A:HIS131 2.9 15.4 0.3 CD2 A:HIS142 3.0 9.0 0.4 HD2 A:HIS142 3.1 10.8 0.4 CE1 A:HIS142 3.1 9.4 0.4 NE2 A:HIS142 3.2 8.6 0.6 O A:HOH539 3.2 43.4 1.0 CD2 A:HIS131 3.3 11.9 0.3 NE2 A:HIS131 3.3 11.9 0.7 HE1 A:HIS142 3.4 11.3 0.4 CD2 A:HIS142 3.4 7.3 0.6 HD2 A:HIS142 3.5 8.8 0.6 ZN A:ZN201 3.6 9.2 0.6 HD2 A:HIS131 3.6 14.3 0.3 ND1 A:HIS131 3.7 12.4 0.7 CE1 A:HIS142 3.8 8.2 0.6 O A:HOH504 3.8 21.9 1.0 HD1 A:HIS131 3.9 14.9 0.7 ND1 A:HIS131 4.1 12.4 0.3 CG A:HIS142 4.1 7.4 0.4 O A:HOH512 4.2 32.3 1.0 HE1 A:HIS142 4.2 9.9 0.6 CG A:HIS142 4.2 6.9 0.6 ND1 A:HIS142 4.2 7.8 0.4 O A:HOH323 4.2 22.9 1.0 CG A:HIS131 4.3 9.9 0.3 ND1 A:HIS142 4.3 7.0 0.6 CD2 A:HIS131 4.6 11.7 0.7 O A:HOH405 4.7 20.4 1.0 CG A:HIS131 4.8 12.0 0.7 HD1 A:HIS131 4.8 14.9 0.3 HD1 A:HIS142 5.0 9.4 0.4

Z.Luo, J.R.Morey, E.Deplazes, V.G.Pederick, A.Motygullina, S.L.Begg, N.Eleftheriadis, M.Isselstein, J.C.Paton, T.Cordes, J.Harmer, B.Kobe, C.A.Mcdevitt. The Molecular Basis of Zinc Acquisition By Streptococcus Pneumoniae Adca To Be Published.