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Zinc in PDB 7h53: Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255)

Enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255)

All present enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255):
3.4.22.29;

Protein crystallography data

The structure of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255), PDB code: 7h53 was solved by R.M.Lithgo, M.Fairhead, L.Koekemoer, B.H.Balcomb, E.Capkin, A.V.Chandran, M.Golding, A.S.Godoy, J.C.Aschenbrenner, P.G.Marples, X.Ni, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.30 / 1.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.175, 56.564, 64.526, 90, 94.75, 90
R / Rfree (%) 18.3 / 20.6

Other elements in 7h53:

The structure of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255) also contains other interesting chemical elements:

Bromine (Br) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255) (pdb code 7h53). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255), PDB code: 7h53:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7h53

Go back to Zinc Binding Sites List in 7h53
Zinc binding site 1 out of 2 in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:12.1
occ:1.00
 ND1 A:HIS118 2.1 13.1 1.0
SG A:CYS116 2.3 11.0 1.0
SG A:CYS56 2.3 12.2 1.0
SG A:CYS58 2.3 13.3 1.0
CE1 A:HIS118 3.0 14.3 1.0
CG A:HIS118 3.1 14.0 1.0
CB A:CYS58 3.2 12.7 1.0
CB A:CYS56 3.2 10.8 1.0
CB A:CYS116 3.3 10.0 1.0
CB A:HIS118 3.5 14.0 1.0
N A:HIS118 3.9 12.9 1.0
O A:HOH354 4.1 24.2 1.0
NE2 A:HIS118 4.2 17.3 1.0
N A:CYS58 4.2 12.4 1.0
CA A:CYS58 4.2 12.1 1.0
CD2 A:HIS118 4.2 15.9 1.0
CA A:HIS118 4.4 13.4 1.0
CB A:ALA54 4.5 11.0 1.0
N A:GLN117 4.5 13.2 1.0
O A:HOH454 4.6 24.6 1.0
CA A:CYS116 4.6 11.0 1.0
CG A:GLN117 4.6 18.5 1.0
CA A:CYS56 4.6 11.6 1.0
C A:CYS116 4.7 11.8 1.0
C A:GLN117 5.0 14.3 1.0

Zinc binding site 2 out of 2 in 7h53

Go back to Zinc Binding Sites List in 7h53
Zinc binding site 2 out of 2 in the Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease -- Crystal Structure of Coxsackievirus A16 (G-10) 2A Protease in Complex with Ncl-00024387 (A71EV2A-X1255) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:17.4
occ:1.00
 ND1 B:HIS118 2.1 19.1 1.0
SG B:CYS116 2.3 15.3 1.0
SG B:CYS58 2.3 18.6 1.0
SG B:CYS56 2.3 17.8 1.0
CE1 B:HIS118 3.0 24.2 1.0
CB B:CYS58 3.1 18.1 1.0
CG B:HIS118 3.1 19.5 1.0
CB B:CYS56 3.3 16.5 1.0
CB B:CYS116 3.3 13.5 1.0
CB B:HIS118 3.5 19.1 1.0
N B:HIS118 3.9 19.3 1.0
NE2 B:HIS118 4.2 26.9 1.0
CA B:CYS58 4.2 16.9 1.0
N B:CYS58 4.2 20.3 1.0
CG B:GLN117 4.2 25.9 1.0
CD2 B:HIS118 4.2 26.5 1.0
CA B:HIS118 4.4 18.6 1.0
N B:GLN117 4.4 19.0 1.0
CB B:ALA54 4.5 11.9 1.0
CA B:CYS116 4.6 15.2 1.0
O B:HOH463 4.6 33.6 1.0
CA B:CYS56 4.7 17.2 1.0
C B:CYS116 4.7 17.2 1.0
C B:GLN117 4.9 22.8 1.0

Reference:

R.M.Lithgo, M.Fairhead, L.Koekemoer, B.H.Balcomb, E.Capkin, A.V.Chandran, M.Golding, A.S.Godoy, J.C.Aschenbrenner, P.G.Marples, X.Ni, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft. Group Deposition For Crystallographic Fragment Screening of Coxsackievirus A16 (G-10) 2A Protease To Be Published.
Page generated: Tue Oct 29 20:51:28 2024

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