Zinc in PDB 7dop: Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1

Zinc Binding Sites:

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Binding sites:

The binding sites of Zinc atom in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 (pdb code 7dop). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1, PDB code: 7dop:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 7dop

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Zinc binding site 1 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:147.7
occ:1.00
 OE1 A:GLU129 1.9 99.0 1.0
NE2 A:HIS79 2.3 95.8 1.0
SG A:CYS141 2.3 89.7 1.0
SG A:CYS134 2.3 95.4 1.0
CD A:GLU129 2.9 99.0 1.0
CB A:CYS134 3.0 95.4 1.0
CE1 A:HIS79 3.1 95.8 1.0
OE2 A:GLU129 3.3 99.0 1.0
CD2 A:HIS79 3.4 95.8 1.0
CB A:CYS141 3.7 89.7 1.0
CG2 A:VAL81 4.2 92.5 1.0
CG A:GLU129 4.2 99.0 1.0
ND1 A:HIS79 4.3 95.8 1.0
CB A:GLN143 4.4 93.9 1.0
CA A:CYS134 4.4 95.4 1.0
CG A:HIS79 4.5 95.8 1.0
CA A:CYS141 4.7 89.7 1.0
CG1 A:VAL81 4.8 92.5 1.0
N A:CYS134 4.8 95.4 1.0
ND1 A:HIS136 4.8 92.8 1.0
O A:PHE133 4.9 95.6 1.0
CB A:VAL81 5.0 92.5 1.0
N A:GLN143 5.0 93.9 1.0

Zinc binding site 2 out of 12 in 7dop

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Zinc binding site 2 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:143.0
occ:1.00
 OE1 B:GLU129 1.9 97.8 1.0
NE2 B:HIS79 2.3 92.6 1.0
SG B:CYS141 2.3 85.6 1.0
SG B:CYS134 2.3 94.2 1.0
CD B:GLU129 2.9 97.8 1.0
CB B:CYS134 3.0 94.2 1.0
CE1 B:HIS79 3.1 92.6 1.0
OE2 B:GLU129 3.3 97.8 1.0
CD2 B:HIS79 3.4 92.6 1.0
CB B:CYS141 3.7 85.6 1.0
CG2 B:VAL81 4.2 90.5 1.0
CG B:GLU129 4.2 97.8 1.0
ND1 B:HIS79 4.3 92.6 1.0
CB B:GLN143 4.4 87.7 1.0
CA B:CYS134 4.4 94.2 1.0
CG B:HIS79 4.5 92.6 1.0
CA B:CYS141 4.7 85.6 1.0
CG1 B:VAL81 4.8 90.5 1.0
N B:CYS134 4.8 94.2 1.0
ND1 B:HIS136 4.8 91.7 1.0
O B:PHE133 4.9 95.6 1.0
CB B:VAL81 5.0 90.5 1.0
N B:GLN143 5.0 87.7 1.0

Zinc binding site 3 out of 12 in 7dop

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Zinc binding site 3 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:139.9
occ:1.00
 OE1 C:GLU129 1.9 99.2 1.0
NE2 C:HIS79 2.3 95.8 1.0
SG C:CYS141 2.3 91.1 1.0
SG C:CYS134 2.3 95.9 1.0
CD C:GLU129 2.9 99.2 1.0
CB C:CYS134 3.0 95.9 1.0
CE1 C:HIS79 3.1 95.8 1.0
OE2 C:GLU129 3.3 99.2 1.0
CD2 C:HIS79 3.4 95.8 1.0
CB C:CYS141 3.7 91.1 1.0
CG2 C:VAL81 4.2 93.0 1.0
CG C:GLU129 4.2 99.2 1.0
ND1 C:HIS79 4.3 95.8 1.0
CB C:GLN143 4.4 94.2 1.0
CA C:CYS134 4.4 95.9 1.0
CG C:HIS79 4.5 95.8 1.0
CA C:CYS141 4.7 91.1 1.0
CG1 C:VAL81 4.8 93.0 1.0
N C:CYS134 4.8 95.9 1.0
ND1 C:HIS136 4.8 95.0 1.0
O C:PHE133 4.9 96.7 1.0
CB C:VAL81 5.0 93.0 1.0
N C:GLN143 5.0 94.2 1.0

Zinc binding site 4 out of 12 in 7dop

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Zinc binding site 4 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1001

b:153.9
occ:1.00
 OE1 D:GLU129 1.9 99.6 1.0
NE2 D:HIS79 2.3 96.0 1.0
SG D:CYS141 2.3 88.4 1.0
SG D:CYS134 2.3 96.7 1.0
CD D:GLU129 2.9 99.6 1.0
CB D:CYS134 3.0 96.7 1.0
CE1 D:HIS79 3.1 96.0 1.0
OE2 D:GLU129 3.3 99.6 1.0
CD2 D:HIS79 3.4 96.0 1.0
CB D:CYS141 3.7 88.4 1.0
CG2 D:VAL81 4.2 93.1 1.0
CG D:GLU129 4.2 99.6 1.0
ND1 D:HIS79 4.3 96.0 1.0
CB D:GLN143 4.4 93.9 1.0
CA D:CYS134 4.4 96.7 1.0
CG D:HIS79 4.5 96.0 1.0
CA D:CYS141 4.7 88.4 1.0
CG1 D:VAL81 4.8 93.1 1.0
N D:CYS134 4.8 96.7 1.0
ND1 D:HIS136 4.8 93.8 1.0
O D:PHE133 4.9 96.4 1.0
CB D:VAL81 5.0 93.1 1.0
N D:GLN143 5.0 93.9 1.0

Zinc binding site 5 out of 12 in 7dop

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Zinc binding site 5 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1001

b:148.8
occ:1.00
 OE1 E:GLU129 1.9 95.4 1.0
NE2 E:HIS79 2.3 92.1 1.0
SG E:CYS141 2.3 85.3 1.0
SG E:CYS134 2.3 94.0 1.0
CD E:GLU129 2.9 95.4 1.0
CB E:CYS134 3.0 94.0 1.0
CE1 E:HIS79 3.1 92.1 1.0
OE2 E:GLU129 3.3 95.4 1.0
CD2 E:HIS79 3.4 92.1 1.0
CB E:CYS141 3.7 85.3 1.0
CG2 E:VAL81 4.2 91.6 1.0
CG E:GLU129 4.2 95.4 1.0
ND1 E:HIS79 4.3 92.1 1.0
CB E:GLN143 4.4 86.8 1.0
CA E:CYS134 4.4 94.0 1.0
CG E:HIS79 4.5 92.1 1.0
CA E:CYS141 4.7 85.3 1.0
CG1 E:VAL81 4.8 91.6 1.0
N E:CYS134 4.8 94.0 1.0
ND1 E:HIS136 4.8 91.5 1.0
O E:PHE133 4.9 94.3 1.0
CB E:VAL81 5.0 91.6 1.0
N E:GLN143 5.0 86.8 1.0

Zinc binding site 6 out of 12 in 7dop

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Zinc binding site 6 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1001

b:135.8
occ:1.00
 OE1 F:GLU129 1.9 100.2 1.0
NE2 F:HIS79 2.3 95.0 1.0
SG F:CYS141 2.3 91.6 1.0
SG F:CYS134 2.3 96.7 1.0
CD F:GLU129 2.9 100.2 1.0
CB F:CYS134 3.0 96.7 1.0
CE1 F:HIS79 3.1 95.0 1.0
OE2 F:GLU129 3.3 100.2 1.0
CD2 F:HIS79 3.4 95.0 1.0
CB F:CYS141 3.7 91.6 1.0
CG2 F:VAL81 4.2 91.4 1.0
CG F:GLU129 4.2 100.2 1.0
ND1 F:HIS79 4.3 95.0 1.0
CB F:GLN143 4.4 92.7 1.0
CA F:CYS134 4.4 96.7 1.0
CG F:HIS79 4.5 95.0 1.0
CA F:CYS141 4.7 91.6 1.0
CG1 F:VAL81 4.8 91.4 1.0
N F:CYS134 4.8 96.7 1.0
ND1 F:HIS136 4.8 95.3 1.0
O F:PHE133 4.9 96.9 1.0
CB F:VAL81 5.0 91.4 1.0
N F:GLN143 5.0 92.7 1.0

Zinc binding site 7 out of 12 in 7dop

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Zinc binding site 7 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1001

b:157.7
occ:1.00
 OE1 G:GLU129 1.9 101.0 1.0
NE2 G:HIS79 2.3 96.4 1.0
SG G:CYS141 2.3 92.3 1.0
SG G:CYS134 2.3 97.6 1.0
CD G:GLU129 2.9 101.0 1.0
CB G:CYS134 3.0 97.6 1.0
CE1 G:HIS79 3.1 96.4 1.0
OE2 G:GLU129 3.3 101.0 1.0
CD2 G:HIS79 3.4 96.4 1.0
CB G:CYS141 3.7 92.3 1.0
CG2 G:VAL81 4.2 93.0 1.0
CG G:GLU129 4.2 101.0 1.0
ND1 G:HIS79 4.3 96.4 1.0
CB G:GLN143 4.4 95.7 1.0
CA G:CYS134 4.4 97.6 1.0
CG G:HIS79 4.5 96.4 1.0
CA G:CYS141 4.7 92.3 1.0
CG1 G:VAL81 4.8 93.0 1.0
N G:CYS134 4.8 97.6 1.0
ND1 G:HIS136 4.8 95.4 1.0
O G:PHE133 4.9 96.6 1.0
CB G:VAL81 5.0 93.0 1.0
N G:GLN143 5.0 95.7 1.0

Zinc binding site 8 out of 12 in 7dop

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Zinc binding site 8 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1001

b:148.1
occ:1.00
 OE1 H:GLU129 1.9 98.7 1.0
NE2 H:HIS79 2.3 94.1 1.0
SG H:CYS141 2.3 86.4 1.0
SG H:CYS134 2.3 96.4 1.0
CD H:GLU129 2.9 98.7 1.0
CB H:CYS134 3.0 96.4 1.0
CE1 H:HIS79 3.1 94.1 1.0
OE2 H:GLU129 3.3 98.7 1.0
CD2 H:HIS79 3.4 94.1 1.0
CB H:CYS141 3.7 86.4 1.0
CG2 H:VAL81 4.2 91.9 1.0
CG H:GLU129 4.2 98.7 1.0
ND1 H:HIS79 4.3 94.1 1.0
CB H:GLN143 4.4 86.8 1.0
CA H:CYS134 4.4 96.4 1.0
CG H:HIS79 4.5 94.1 1.0
CA H:CYS141 4.7 86.4 1.0
CG1 H:VAL81 4.8 91.9 1.0
N H:CYS134 4.8 96.4 1.0
ND1 H:HIS136 4.8 93.1 1.0
O H:PHE133 4.9 96.7 1.0
CB H:VAL81 5.0 91.9 1.0
N H:GLN143 5.0 86.8 1.0

Zinc binding site 9 out of 12 in 7dop

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Zinc binding site 9 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1001

b:135.1
occ:1.00
 OE1 I:GLU129 1.9 101.7 1.0
NE2 I:HIS79 2.3 94.3 1.0
SG I:CYS141 2.3 91.2 1.0
SG I:CYS134 2.3 95.8 1.0
CD I:GLU129 2.9 101.7 1.0
CB I:CYS134 3.0 95.8 1.0
CE1 I:HIS79 3.1 94.3 1.0
OE2 I:GLU129 3.3 101.7 1.0
CD2 I:HIS79 3.4 94.3 1.0
CB I:CYS141 3.7 91.2 1.0
CG2 I:VAL81 4.2 89.8 1.0
CG I:GLU129 4.2 101.7 1.0
ND1 I:HIS79 4.3 94.3 1.0
CB I:GLN143 4.4 92.5 1.0
CA I:CYS134 4.4 95.8 1.0
CG I:HIS79 4.5 94.3 1.0
CA I:CYS141 4.7 91.2 1.0
CG1 I:VAL81 4.8 89.8 1.0
N I:CYS134 4.8 95.8 1.0
ND1 I:HIS136 4.8 95.1 1.0
O I:PHE133 4.9 95.9 1.0
CB I:VAL81 5.0 89.8 1.0
N I:GLN143 5.0 92.5 1.0

Zinc binding site 10 out of 12 in 7dop

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Zinc binding site 10 out of 12 in the Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1001

b:136.4
occ:1.00
 OE1 J:GLU129 1.9 99.7 1.0
NE2 J:HIS79 2.3 95.0 1.0
SG J:CYS141 2.3 91.0 1.0
SG J:CYS134 2.3 95.5 1.0
CD J:GLU129 2.9 99.7 1.0
CB J:CYS134 3.0 95.5 1.0
CE1 J:HIS79 3.1 95.0 1.0
OE2 J:GLU129 3.3 99.7 1.0
CD2 J:HIS79 3.4 95.0 1.0
CB J:CYS141 3.7 91.0 1.0
CG2 J:VAL81 4.2 92.1 1.0
CG J:GLU129 4.2 99.7 1.0
ND1 J:HIS79 4.3 95.0 1.0
CB J:GLN143 4.4 91.9 1.0
CA J:CYS134 4.4 95.5 1.0
CG J:HIS79 4.5 95.0 1.0
CA J:CYS141 4.7 91.0 1.0
CG1 J:VAL81 4.8 92.1 1.0
N J:CYS134 4.8 95.5 1.0
ND1 J:HIS136 4.8 95.2 1.0
O J:PHE133 4.9 95.9 1.0
CB J:VAL81 5.0 92.1 1.0
N J:GLN143 5.0 91.9 1.0

Reference:

K.Zhang, Y.S.Law, M.C.Y.Law, Y.B.Tan, M.Wirawan, D.H.Luo. Structural Insights Into Viral Rna Capping and Plasma Membrane Targeting By Chikungunya Virus Nonstructural Protein 1 Cell Host Microbe 2021.
ISSN: ESSN 1934-6069
DOI: 10.1016/J.CHOM.2021.02.018
Page generated: Tue Oct 29 19:12:25 2024

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