Zinc in PDB 7c2k: Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex

Enzymatic activity of Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex

All present enzymatic activity of Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex:
2.7.7.48;

Zinc Binding Sites:

The binding sites of Zinc atom in the Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex (pdb code 7c2k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex, PDB code: 7c2k:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7c2k

Go back to Zinc Binding Sites List in 7c2k
Zinc binding site 1 out of 2 in the Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:53.2
occ:1.00
ND1 A:HIS295 2.6 26.9 1.0
CB A:CYS306 2.8 31.6 1.0
SG A:CYS310 2.8 27.1 1.0
CE1 A:HIS295 3.0 26.9 1.0
SG A:CYS306 3.2 31.6 1.0
SG A:CYS301 3.3 30.7 1.0
O A:CYS306 3.4 31.6 1.0
CA A:CYS306 3.5 31.6 1.0
C A:CYS306 3.6 31.6 1.0
CB A:CYS301 3.7 30.7 1.0
CG A:HIS295 3.9 26.9 1.0
CA A:CYS301 3.9 30.7 1.0
NE2 A:HIS295 4.3 26.9 1.0
N A:LEU302 4.4 30.4 1.0
CB A:CYS310 4.4 27.1 1.0
O A:THR293 4.4 30.3 1.0
CB A:HIS295 4.6 26.9 1.0
N A:ILE307 4.6 27.5 1.0
C A:CYS301 4.7 30.7 1.0
CD2 A:HIS295 4.7 26.9 1.0
N A:HIS295 4.9 26.9 1.0
N A:CYS306 4.9 31.6 1.0
ND1 A:HIS309 4.9 26.8 1.0
CG A:LEU302 5.0 30.4 1.0

Zinc binding site 2 out of 2 in 7c2k

Go back to Zinc Binding Sites List in 7c2k
Zinc binding site 2 out of 2 in the Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Covid-19 Rna-Dependent Rna Polymerase Pre-Translocated Catalytic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:46.6
occ:1.00
ND1 A:HIS642 2.6 30.9 1.0
SG A:CYS646 2.8 34.5 1.0
SG A:CYS487 2.8 31.1 1.0
SG A:CYS645 2.9 36.1 1.0
CB A:HIS642 3.0 30.9 1.0
CG A:HIS642 3.1 30.9 1.0
CB A:CYS646 3.3 34.5 1.0
CE1 A:HIS642 3.7 30.9 1.0
CE1 A:PHE571 3.7 28.7 1.0
N A:CYS646 4.0 34.5 1.0
CB A:CYS487 4.1 31.1 1.0
CB A:CYS645 4.2 36.1 1.0
CA A:HIS642 4.2 30.9 1.0
CA A:CYS646 4.3 34.5 1.0
CD2 A:HIS642 4.3 30.9 1.0
CD1 A:PHE571 4.3 28.7 1.0
C A:CYS645 4.4 36.1 1.0
N A:CYS487 4.5 31.1 1.0
NE2 A:HIS642 4.6 30.9 1.0
CZ A:PHE571 4.6 28.7 1.0
O A:CYS645 4.8 36.1 1.0
O A:HIS642 4.8 30.9 1.0
CA A:CYS645 4.9 36.1 1.0
CA A:CYS487 4.9 31.1 1.0
C A:HIS642 4.9 30.9 1.0
NZ A:LYS532 4.9 29.0 1.0

Reference:

Q.Wang, J.Wu, H.Wang, Y.Gao, Q.Liu, A.Mu, W.Ji, L.Yan, Y.Zhu, C.Zhu, X.Fang, H.Yang, Y.Huang, H.Gao, F.Liu, J.Ge, Q.Sun, X.Yang, W.Xu, Z.Liu, H.Yang, Z.Lou, B.Jiang, L.W.Guddat, P.Gong, Z.Rao. Structural Basis For Rna Replication By the Sars-Cov-2 Polymerase Cell(Cambridge,Mass.) 2020.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2020.05.034
Page generated: Wed Dec 16 13:39:22 2020

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