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Zinc in PDB 7aoe: Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)

Enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)

All present enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex):
2.7.7.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) (pdb code 7aoe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex), PDB code: 7aoe:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 7aoe

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Zinc binding site 1 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1701

b:157.0
occ:1.00
 NE2 A:HIS76 2.0 48.0 1.0
SG A:CYS73 2.3 69.4 1.0
SG A:CYS66 2.4 70.0 1.0
SG A:CYS63 2.4 73.9 1.0
CD2 A:HIS76 2.6 48.0 1.0
CB A:CYS63 3.0 73.9 1.0
CE1 A:HIS76 3.2 48.0 1.0
CB A:CYS66 3.6 70.0 1.0
CG A:HIS76 3.8 48.0 1.0
N A:CYS66 3.9 70.0 1.0
ND1 A:HIS76 4.1 48.0 1.0
CB A:CYS73 4.1 69.4 1.0
CA A:CYS66 4.4 70.0 1.0
CA A:CYS63 4.4 73.9 1.0
O A:ALA53 4.5 51.8 1.0
N A:GLY75 4.5 52.1 1.0
CB A:THR65 4.6 64.1 1.0
N A:THR65 4.8 64.1 1.0
C A:CYS63 4.8 73.9 1.0
CA A:GLY75 4.8 52.1 1.0
CA A:CYS73 4.9 69.4 1.0
C A:THR65 4.9 64.1 1.0
CD A:PRO56 4.9 60.0 1.0
CD A:PRO74 4.9 54.5 1.0
CG A:PRO56 4.9 60.0 1.0
OG1 A:THR65 5.0 64.1 1.0

Zinc binding site 2 out of 6 in 7aoe

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Zinc binding site 2 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1702

b:173.7
occ:1.00
 CB A:CYS231 1.9 105.7 1.0
CB A:CYS106 2.1 94.9 1.0
SG A:CYS103 2.4 93.2 1.0
SG A:CYS228 2.5 102.9 1.0
SG A:CYS106 2.6 94.9 1.0
SG A:CYS231 2.6 105.7 1.0
CB A:CYS228 3.1 102.9 1.0
CA A:CYS106 3.1 94.9 1.0
CA A:CYS231 3.2 105.7 1.0
N A:CYS106 3.4 94.9 1.0
N A:CYS231 3.6 105.7 1.0
CB A:CYS103 4.0 93.2 1.0
C A:CYS231 4.1 105.7 1.0
C A:TYR105 4.4 91.0 1.0
CB A:SER233 4.4 103.1 1.0
C A:CYS106 4.5 94.9 1.0
N A:SER233 4.5 103.1 1.0
N A:GLN232 4.5 104.3 1.0
CA A:CYS228 4.6 102.9 1.0
O A:CYS231 4.8 105.7 1.0
C A:ASN230 4.8 100.4 1.0
CB A:TYR105 5.0 91.0 1.0

Zinc binding site 3 out of 6 in 7aoe

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Zinc binding site 3 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:96.0
occ:1.00
 SG B:CYS1118 2.2 67.3 1.0
SG B:CYS1089 2.2 47.3 1.0
SG B:CYS1092 2.2 52.4 1.0
SG B:CYS1115 2.2 57.9 1.0
CB B:CYS1118 2.6 67.3 1.0
CB B:CYS1115 3.1 57.9 1.0
CB B:CYS1092 3.2 52.4 1.0
CB B:CYS1089 3.2 47.3 1.0
N B:CYS1118 3.4 67.3 1.0
CA B:CYS1118 3.6 67.3 1.0
N B:CYS1092 3.8 52.4 1.0
CA B:CYS1092 4.1 52.4 1.0
CB B:ASP1091 4.5 56.9 1.0
C B:SER1117 4.5 61.8 1.0
CA B:CYS1115 4.5 57.9 1.0
CA B:CYS1089 4.6 47.3 1.0
CA B:GLY1143 4.7 67.0 1.0
C B:CYS1118 4.7 67.3 1.0
C B:CYS1115 4.8 57.9 1.0
C B:ASP1091 4.8 56.9 1.0
N B:SER1117 4.9 61.8 1.0
CB B:SER1117 4.9 61.8 1.0
O B:CYS1115 4.9 57.9 1.0
CA B:SER1117 5.0 61.8 1.0

Zinc binding site 4 out of 6 in 7aoe

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Zinc binding site 4 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:133.6
occ:1.00
 CB I:CYS27 2.1 104.5 1.0
CB I:CYS10 2.3 85.8 1.0
SG I:CYS13 2.3 84.9 1.0
SG I:CYS30 2.3 95.3 1.0
SG I:CYS10 2.3 85.8 1.0
SG I:CYS27 2.3 104.5 1.0
CA I:CYS27 3.6 104.5 1.0
O I:ASN15 3.7 80.7 1.0
CA I:CYS10 3.7 85.8 1.0
CB I:CYS13 3.8 84.9 1.0
CD2 I:LEU17 3.9 83.8 1.0
N I:CYS13 4.0 84.9 1.0
CB I:CYS30 4.0 95.3 1.0
OH I:TYR34 4.1 101.1 1.0
OG I:SER32 4.1 97.3 1.0
CB I:ASN15 4.2 80.7 1.0
C I:CYS13 4.2 84.9 1.0
CA I:CYS13 4.2 84.9 1.0
N I:ASN15 4.2 80.7 1.0
O I:CYS13 4.2 84.9 1.0
N I:CYS27 4.2 104.5 1.0
N I:CYS10 4.5 85.8 1.0
C I:CYS27 4.5 104.5 1.0
CA I:ASN15 4.5 80.7 1.0
C I:ASN15 4.6 80.7 1.0
C I:CYS10 4.7 85.8 1.0
N I:CYS30 4.7 95.3 1.0
N I:GLY14 4.8 76.8 1.0
N I:SER11 4.8 74.9 1.0
CA I:CYS30 4.9 95.3 1.0

Zinc binding site 5 out of 6 in 7aoe

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Zinc binding site 5 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:41.0
occ:1.00
 CB J:CYS10 1.9 18.3 1.0
N J:CYS10 2.2 18.3 1.0
SG J:CYS45 2.3 18.8 1.0
SG J:CYS44 2.3 20.4 1.0
CA J:CYS10 2.4 18.3 1.0
SG J:CYS7 2.4 17.2 1.0
C J:CYS10 3.1 18.3 1.0
SG J:CYS10 3.1 18.3 1.0
C J:SER9 3.5 18.1 1.0
O J:CYS10 3.6 18.3 1.0
CB J:CYS45 3.7 18.8 1.0
N J:CYS45 3.7 18.8 1.0
N J:GLY11 3.8 19.1 1.0
CA J:CYS45 4.0 18.8 1.0
CB J:CYS44 4.0 20.4 1.0
CB J:CYS7 4.2 17.2 1.0
CA J:SER9 4.2 18.1 1.0
N J:SER9 4.2 18.1 1.0
CB J:SER9 4.2 18.1 1.0
O J:CYS7 4.4 17.2 1.0
C J:CYS44 4.4 20.4 1.0
O J:SER9 4.5 18.1 1.0
C J:CYS7 4.6 17.2 1.0
N J:LYS12 4.6 17.2 1.0
C J:PHE8 4.8 15.5 1.0
CA J:CYS44 4.9 20.4 1.0
CA J:GLY11 4.9 19.1 1.0

Zinc binding site 6 out of 6 in 7aoe

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Zinc binding site 6 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Schizosaccharomyces Pombe Rna Polymerase I (Elongation Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:109.8
occ:1.00
 CB L:CYS44 2.0 52.0 1.0
SG L:CYS44 2.1 52.0 1.0
SG L:CYS24 2.2 36.0 1.0
SG L:CYS41 2.3 50.4 1.0
SG L:CYS27 2.4 36.1 1.0
CB L:CYS41 2.4 50.4 1.0
CB L:HIS46 3.1 36.0 1.0
CA L:CYS44 3.3 52.0 1.0
CB L:CYS24 3.6 36.0 1.0
N L:HIS46 3.7 36.0 1.0
N L:CYS44 3.8 52.0 1.0
CB L:CYS27 3.9 36.1 1.0
CA L:CYS41 3.9 50.4 1.0
CA L:HIS46 4.0 36.0 1.0
C L:CYS44 4.0 52.0 1.0
N L:CYS27 4.2 36.1 1.0
N L:GLY45 4.2 45.4 1.0
CG L:HIS46 4.2 36.0 1.0
N L:CYS41 4.6 50.4 1.0
C L:CYS41 4.6 50.4 1.0
CA L:CYS27 4.7 36.1 1.0
CA L:CYS24 4.7 36.0 1.0
O L:CYS41 4.8 50.4 1.0
CD2 L:HIS46 4.8 36.0 1.0
C L:HIS46 4.8 36.0 1.0
C L:GLY45 4.8 45.4 1.0
O L:CYS44 4.8 52.0 1.0
CB L:ASP26 4.8 31.1 1.0
O L:HIS46 4.9 36.0 1.0
N L:ASP26 5.0 36.0 1.0

Reference:

F.B.Heiss, J.L.Daiss, P.Becker, C.Engel. Conserved Strategies of Rna Polymerase I Hibernation and Activation. Nat Commun V. 12 758 2021.
ISSN: ESSN 2041-1723
PubMed: 33536435
DOI: 10.1038/S41467-021-21031-8
Page generated: Tue Oct 29 17:00:52 2024

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