Zinc in PDB 7aod: Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
Enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
All present enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Dimer):
2.7.7.6;
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Zinc atom in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
(pdb code 7aod). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the
Schizosaccharomyces Pombe Rna Polymerase I (Dimer), PDB code: 7aod:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 1 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1701
b:158.8
occ:1.00
|
NE2
|
A:HIS76
|
2.0
|
114.5
|
1.0
|
|
SG
|
A:CYS66
|
2.2
|
122.6
|
1.0
|
|
SG
|
A:CYS63
|
2.2
|
111.0
|
1.0
|
|
SG
|
A:CYS73
|
2.4
|
96.0
|
1.0
|
|
N
|
A:CYS66
|
2.4
|
122.6
|
1.0
|
|
CB
|
A:CYS66
|
2.5
|
122.6
|
1.0
|
|
CD2
|
A:HIS76
|
2.5
|
114.5
|
1.0
|
|
CB
|
A:CYS63
|
2.8
|
111.0
|
1.0
|
|
CA
|
A:CYS66
|
2.9
|
122.6
|
1.0
|
|
CE1
|
A:HIS76
|
3.2
|
114.5
|
1.0
|
|
C
|
A:THR65
|
3.5
|
115.4
|
1.0
|
|
CB
|
A:THR65
|
3.6
|
115.4
|
1.0
|
|
CG
|
A:HIS76
|
3.7
|
114.5
|
1.0
|
|
CA
|
A:THR65
|
3.9
|
115.4
|
1.0
|
|
CB
|
A:CYS73
|
3.9
|
96.0
|
1.0
|
|
C
|
A:CYS66
|
3.9
|
122.6
|
1.0
|
|
ND1
|
A:HIS76
|
4.0
|
114.5
|
1.0
|
|
N
|
A:THR65
|
4.0
|
115.4
|
1.0
|
|
N
|
A:HIS67
|
4.2
|
117.2
|
1.0
|
|
CA
|
A:CYS63
|
4.2
|
111.0
|
1.0
|
|
CG2
|
A:THR65
|
4.3
|
115.4
|
1.0
|
|
C
|
A:CYS63
|
4.5
|
111.0
|
1.0
|
|
O
|
A:THR65
|
4.6
|
115.4
|
1.0
|
|
OG1
|
A:THR65
|
4.7
|
115.4
|
1.0
|
|
O
|
A:CYS63
|
4.7
|
111.0
|
1.0
|
|
CA
|
A:CYS73
|
4.8
|
96.0
|
1.0
|
|
O
|
A:CYS66
|
4.9
|
122.6
|
1.0
|
|
Zinc binding site 2 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 2 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1702
b:190.7
occ:1.00
|
N
|
A:CYS106
|
1.9
|
156.3
|
1.0
|
|
CB
|
A:CYS106
|
2.1
|
156.3
|
1.0
|
|
CB
|
A:CYS231
|
2.1
|
164.3
|
1.0
|
|
CA
|
A:CYS106
|
2.2
|
156.3
|
1.0
|
|
SG
|
A:CYS103
|
2.3
|
150.2
|
1.0
|
|
SG
|
A:CYS231
|
2.3
|
164.3
|
1.0
|
|
SG
|
A:CYS228
|
2.4
|
162.7
|
1.0
|
|
OG
|
A:SER233
|
2.8
|
160.4
|
1.0
|
|
C
|
A:TYR105
|
2.9
|
153.0
|
1.0
|
|
CB
|
A:CYS228
|
3.3
|
162.7
|
1.0
|
|
CA
|
A:CYS231
|
3.6
|
164.3
|
1.0
|
|
SG
|
A:CYS106
|
3.6
|
156.3
|
1.0
|
|
C
|
A:CYS106
|
3.7
|
156.3
|
1.0
|
|
CB
|
A:TYR105
|
3.7
|
153.0
|
1.0
|
|
CA
|
A:TYR105
|
3.7
|
153.0
|
1.0
|
|
O
|
A:TYR105
|
3.7
|
153.0
|
1.0
|
|
CB
|
A:CYS103
|
4.0
|
150.2
|
1.0
|
|
CB
|
A:SER233
|
4.0
|
160.4
|
1.0
|
|
N
|
A:TYR105
|
4.0
|
153.0
|
1.0
|
|
C
|
A:CYS231
|
4.1
|
164.3
|
1.0
|
|
N
|
A:CYS231
|
4.2
|
164.3
|
1.0
|
|
N
|
A:HIS107
|
4.3
|
142.5
|
1.0
|
|
N
|
A:SER233
|
4.4
|
160.4
|
1.0
|
|
O
|
A:CYS231
|
4.5
|
164.3
|
1.0
|
|
O
|
A:CYS106
|
4.6
|
156.3
|
1.0
|
|
CA
|
A:SER233
|
4.7
|
160.4
|
1.0
|
|
N
|
A:GLN232
|
4.7
|
157.1
|
1.0
|
|
CA
|
A:CYS228
|
4.7
|
162.7
|
1.0
|
|
C
|
A:SER233
|
4.9
|
160.4
|
1.0
|
|
O
|
A:SER233
|
5.0
|
160.4
|
1.0
|
|
C
|
A:CYS103
|
5.0
|
150.2
|
1.0
|
|
Zinc binding site 3 out
of 12 in 7aod
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Zinc Binding Sites List in 7aod
Zinc binding site 3 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1301
b:152.6
occ:1.00
|
CB
|
B:CYS1118
|
2.0
|
116.9
|
1.0
|
|
SG
|
B:CYS1115
|
2.2
|
104.0
|
1.0
|
|
SG
|
B:CYS1092
|
2.2
|
115.8
|
1.0
|
|
SG
|
B:CYS1089
|
2.3
|
114.9
|
1.0
|
|
CB
|
B:CYS1092
|
2.6
|
115.8
|
1.0
|
|
N
|
B:CYS1118
|
2.6
|
116.9
|
1.0
|
|
CA
|
B:CYS1118
|
2.7
|
116.9
|
1.0
|
|
OG
|
B:SER1117
|
2.9
|
112.2
|
1.0
|
|
CB
|
B:CYS1115
|
3.2
|
104.0
|
1.0
|
|
SG
|
B:CYS1118
|
3.3
|
116.9
|
1.0
|
|
CB
|
B:CYS1089
|
3.4
|
114.9
|
1.0
|
|
C
|
B:SER1117
|
3.6
|
112.2
|
1.0
|
|
CA
|
B:CYS1092
|
3.7
|
115.8
|
1.0
|
|
N
|
B:CYS1092
|
3.8
|
115.8
|
1.0
|
|
OG
|
B:SER1097
|
4.0
|
103.9
|
1.0
|
|
C
|
B:CYS1118
|
4.1
|
116.9
|
1.0
|
|
CB
|
B:SER1117
|
4.1
|
112.2
|
1.0
|
|
CA
|
B:SER1117
|
4.3
|
112.2
|
1.0
|
|
N
|
B:SER1117
|
4.5
|
112.2
|
1.0
|
|
O
|
B:SER1117
|
4.5
|
112.2
|
1.0
|
|
CA
|
B:CYS1115
|
4.6
|
104.0
|
1.0
|
|
N
|
B:ALA1119
|
4.7
|
114.8
|
1.0
|
|
C
|
B:CYS1092
|
4.8
|
115.8
|
1.0
|
|
CA
|
B:CYS1089
|
4.8
|
114.9
|
1.0
|
|
O
|
B:CYS1118
|
4.8
|
116.9
|
1.0
|
|
C
|
B:CYS1115
|
4.8
|
104.0
|
1.0
|
|
Zinc binding site 4 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 4 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:229.5
occ:1.00
|
CB
|
I:CYS27
|
2.1
|
217.3
|
1.0
|
|
CB
|
I:CYS10
|
2.2
|
178.7
|
1.0
|
|
SG
|
I:CYS13
|
2.3
|
194.9
|
1.0
|
|
SG
|
I:CYS30
|
2.3
|
214.8
|
1.0
|
|
SG
|
I:CYS10
|
2.3
|
178.7
|
1.0
|
|
SG
|
I:CYS27
|
2.3
|
217.3
|
1.0
|
|
CD2
|
I:LEU17
|
3.4
|
180.4
|
1.0
|
|
CA
|
I:CYS27
|
3.5
|
217.3
|
1.0
|
|
CA
|
I:CYS10
|
3.7
|
178.7
|
1.0
|
|
CB
|
I:CYS13
|
4.0
|
194.9
|
1.0
|
|
N
|
I:CYS27
|
4.0
|
217.3
|
1.0
|
|
CB
|
I:CYS30
|
4.1
|
214.8
|
1.0
|
|
N
|
I:CYS13
|
4.3
|
194.9
|
1.0
|
|
CB
|
I:ASN15
|
4.3
|
179.1
|
1.0
|
|
O
|
I:CYS13
|
4.4
|
194.9
|
1.0
|
|
N
|
I:CYS10
|
4.4
|
178.7
|
1.0
|
|
CE2
|
I:TYR34
|
4.4
|
211.3
|
1.0
|
|
O
|
I:ASN15
|
4.4
|
179.1
|
1.0
|
|
CA
|
I:CYS13
|
4.5
|
194.9
|
1.0
|
|
C
|
I:CYS13
|
4.6
|
194.9
|
1.0
|
|
CG
|
I:LEU17
|
4.6
|
180.4
|
1.0
|
|
C
|
I:CYS27
|
4.6
|
217.3
|
1.0
|
|
C
|
I:CYS10
|
4.7
|
178.7
|
1.0
|
|
CB
|
I:SER32
|
4.7
|
210.3
|
1.0
|
|
N
|
I:ASN15
|
4.8
|
179.1
|
1.0
|
|
OH
|
I:TYR34
|
4.8
|
211.3
|
1.0
|
|
OG
|
I:SER32
|
4.8
|
210.3
|
1.0
|
|
N
|
I:SER11
|
4.9
|
187.6
|
1.0
|
|
Zinc binding site 5 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 5 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:159.7
occ:1.00
|
CB
|
J:CYS10
|
2.1
|
106.5
|
1.0
|
|
SG
|
J:CYS10
|
2.2
|
106.5
|
1.0
|
|
N
|
J:CYS45
|
2.2
|
111.5
|
1.0
|
|
N
|
J:CYS10
|
2.3
|
106.5
|
1.0
|
|
SG
|
J:CYS45
|
2.3
|
111.5
|
1.0
|
|
CB
|
J:CYS45
|
2.4
|
111.5
|
1.0
|
|
CA
|
J:CYS45
|
2.5
|
111.5
|
1.0
|
|
SG
|
J:CYS7
|
2.5
|
84.3
|
1.0
|
|
SG
|
J:CYS44
|
2.5
|
100.2
|
1.0
|
|
CA
|
J:CYS10
|
2.6
|
106.5
|
1.0
|
|
OG
|
J:SER9
|
2.7
|
85.2
|
1.0
|
|
C
|
J:CYS44
|
3.0
|
100.2
|
1.0
|
|
C
|
J:SER9
|
3.5
|
85.2
|
1.0
|
|
CB
|
J:CYS44
|
3.5
|
100.2
|
1.0
|
|
O
|
J:CYS44
|
3.7
|
100.2
|
1.0
|
|
CB
|
J:SER9
|
3.8
|
85.2
|
1.0
|
|
C
|
J:CYS10
|
3.8
|
106.5
|
1.0
|
|
CB
|
J:CYS7
|
3.8
|
84.3
|
1.0
|
|
CA
|
J:CYS44
|
3.9
|
100.2
|
1.0
|
|
C
|
J:CYS45
|
4.0
|
111.5
|
1.0
|
|
CA
|
J:SER9
|
4.0
|
85.2
|
1.0
|
|
N
|
J:SER9
|
4.2
|
85.2
|
1.0
|
|
O
|
J:CYS10
|
4.2
|
106.5
|
1.0
|
|
O
|
J:SER9
|
4.5
|
85.2
|
1.0
|
|
N
|
J:ARG46
|
4.7
|
89.8
|
1.0
|
|
N
|
J:GLY11
|
4.7
|
88.7
|
1.0
|
|
O
|
J:CYS45
|
4.8
|
111.5
|
1.0
|
|
N
|
J:CYS44
|
4.8
|
100.2
|
1.0
|
|
C
|
J:CYS7
|
5.0
|
84.3
|
1.0
|
|
Zinc binding site 6 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 6 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:137.5
occ:1.00
|
CB
|
L:CYS41
|
2.0
|
102.2
|
1.0
|
|
SG
|
L:CYS44
|
2.1
|
105.5
|
1.0
|
|
SG
|
L:CYS24
|
2.1
|
99.1
|
1.0
|
|
SG
|
L:CYS41
|
2.3
|
102.2
|
1.0
|
|
SG
|
L:CYS27
|
2.5
|
111.5
|
1.0
|
|
CB
|
L:HIS46
|
2.5
|
101.4
|
1.0
|
|
N
|
L:HIS46
|
2.7
|
101.4
|
1.0
|
|
OD1
|
L:ASP26
|
2.9
|
108.3
|
1.0
|
|
CA
|
L:HIS46
|
3.2
|
101.4
|
1.0
|
|
CA
|
L:CYS41
|
3.5
|
102.2
|
1.0
|
|
N
|
L:GLY45
|
3.6
|
103.0
|
1.0
|
|
CB
|
L:CYS44
|
3.7
|
105.5
|
1.0
|
|
CB
|
L:CYS24
|
3.7
|
99.1
|
1.0
|
|
CG
|
L:HIS46
|
3.8
|
101.4
|
1.0
|
|
CB
|
L:CYS27
|
3.9
|
111.5
|
1.0
|
|
C
|
L:GLY45
|
3.9
|
103.0
|
1.0
|
|
CG
|
L:ASP26
|
3.9
|
108.3
|
1.0
|
|
C
|
L:HIS46
|
4.1
|
101.4
|
1.0
|
|
O
|
L:HIS46
|
4.1
|
101.4
|
1.0
|
|
C
|
L:CYS44
|
4.1
|
105.5
|
1.0
|
|
N
|
L:CYS41
|
4.1
|
102.2
|
1.0
|
|
OD2
|
L:ASP26
|
4.1
|
108.3
|
1.0
|
|
CA
|
L:CYS44
|
4.2
|
105.5
|
1.0
|
|
CA
|
L:GLY45
|
4.3
|
103.0
|
1.0
|
|
N
|
L:CYS44
|
4.3
|
105.5
|
1.0
|
|
N
|
L:CYS27
|
4.3
|
111.5
|
1.0
|
|
ND1
|
L:HIS46
|
4.4
|
101.4
|
1.0
|
|
C
|
L:CYS41
|
4.4
|
102.2
|
1.0
|
|
CA
|
L:CYS24
|
4.7
|
99.1
|
1.0
|
|
CA
|
L:CYS27
|
4.7
|
111.5
|
1.0
|
|
O
|
L:CYS41
|
4.8
|
102.2
|
1.0
|
|
O
|
L:GLY45
|
4.9
|
103.0
|
1.0
|
|
O
|
L:CYS44
|
5.0
|
105.5
|
1.0
|
|
Zinc binding site 7 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 7 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn1701
b:160.1
occ:1.00
|
NE2
|
M:HIS76
|
2.0
|
111.2
|
1.0
|
|
SG
|
M:CYS66
|
2.2
|
124.1
|
1.0
|
|
SG
|
M:CYS63
|
2.2
|
111.0
|
1.0
|
|
SG
|
M:CYS73
|
2.4
|
94.0
|
1.0
|
|
N
|
M:CYS66
|
2.4
|
124.1
|
1.0
|
|
CB
|
M:CYS66
|
2.5
|
124.1
|
1.0
|
|
CD2
|
M:HIS76
|
2.5
|
111.2
|
1.0
|
|
CB
|
M:CYS63
|
2.8
|
111.0
|
1.0
|
|
CA
|
M:CYS66
|
2.9
|
124.1
|
1.0
|
|
CE1
|
M:HIS76
|
3.2
|
111.2
|
1.0
|
|
C
|
M:THR65
|
3.5
|
115.1
|
1.0
|
|
CB
|
M:THR65
|
3.6
|
115.1
|
1.0
|
|
CG
|
M:HIS76
|
3.7
|
111.2
|
1.0
|
|
CA
|
M:THR65
|
3.9
|
115.1
|
1.0
|
|
CB
|
M:CYS73
|
3.9
|
94.0
|
1.0
|
|
C
|
M:CYS66
|
3.9
|
124.1
|
1.0
|
|
ND1
|
M:HIS76
|
4.0
|
111.2
|
1.0
|
|
N
|
M:THR65
|
4.0
|
115.1
|
1.0
|
|
N
|
M:HIS67
|
4.2
|
118.2
|
1.0
|
|
CA
|
M:CYS63
|
4.2
|
111.0
|
1.0
|
|
CG2
|
M:THR65
|
4.3
|
115.1
|
1.0
|
|
C
|
M:CYS63
|
4.5
|
111.0
|
1.0
|
|
O
|
M:THR65
|
4.6
|
115.1
|
1.0
|
|
OG1
|
M:THR65
|
4.7
|
115.1
|
1.0
|
|
O
|
M:CYS63
|
4.7
|
111.0
|
1.0
|
|
CA
|
M:CYS73
|
4.8
|
94.0
|
1.0
|
|
O
|
M:CYS66
|
4.9
|
124.1
|
1.0
|
|
Zinc binding site 8 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 8 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn1702
b:191.4
occ:1.00
|
N
|
M:CYS106
|
1.9
|
158.9
|
1.0
|
|
CB
|
M:CYS106
|
2.1
|
158.9
|
1.0
|
|
CB
|
M:CYS231
|
2.1
|
167.1
|
1.0
|
|
CA
|
M:CYS106
|
2.2
|
158.9
|
1.0
|
|
SG
|
M:CYS103
|
2.3
|
151.8
|
1.0
|
|
SG
|
M:CYS231
|
2.3
|
167.1
|
1.0
|
|
SG
|
M:CYS228
|
2.4
|
165.6
|
1.0
|
|
OG
|
M:SER233
|
2.8
|
164.6
|
1.0
|
|
C
|
M:TYR105
|
2.9
|
155.1
|
1.0
|
|
CB
|
M:CYS228
|
3.3
|
165.6
|
1.0
|
|
CA
|
M:CYS231
|
3.6
|
167.1
|
1.0
|
|
SG
|
M:CYS106
|
3.6
|
158.9
|
1.0
|
|
C
|
M:CYS106
|
3.7
|
158.9
|
1.0
|
|
CB
|
M:TYR105
|
3.7
|
155.1
|
1.0
|
|
CA
|
M:TYR105
|
3.7
|
155.1
|
1.0
|
|
O
|
M:TYR105
|
3.7
|
155.1
|
1.0
|
|
CB
|
M:CYS103
|
4.0
|
151.8
|
1.0
|
|
CB
|
M:SER233
|
4.0
|
164.6
|
1.0
|
|
N
|
M:TYR105
|
4.0
|
155.1
|
1.0
|
|
C
|
M:CYS231
|
4.1
|
167.1
|
1.0
|
|
N
|
M:CYS231
|
4.2
|
167.1
|
1.0
|
|
N
|
M:HIS107
|
4.3
|
144.4
|
1.0
|
|
N
|
M:SER233
|
4.4
|
164.6
|
1.0
|
|
O
|
M:CYS231
|
4.5
|
167.1
|
1.0
|
|
O
|
M:CYS106
|
4.6
|
158.9
|
1.0
|
|
CA
|
M:SER233
|
4.7
|
164.6
|
1.0
|
|
N
|
M:GLN232
|
4.7
|
161.4
|
1.0
|
|
CA
|
M:CYS228
|
4.7
|
165.6
|
1.0
|
|
C
|
M:SER233
|
4.9
|
164.6
|
1.0
|
|
O
|
M:SER233
|
5.0
|
164.6
|
1.0
|
|
C
|
M:CYS103
|
5.0
|
151.8
|
1.0
|
|
Zinc binding site 9 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 9 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Zn1301
b:150.2
occ:1.00
|
CB
|
N:CYS1118
|
2.0
|
115.8
|
1.0
|
|
SG
|
N:CYS1115
|
2.2
|
103.2
|
1.0
|
|
SG
|
N:CYS1092
|
2.2
|
117.4
|
1.0
|
|
SG
|
N:CYS1089
|
2.3
|
117.1
|
1.0
|
|
CB
|
N:CYS1092
|
2.6
|
117.4
|
1.0
|
|
N
|
N:CYS1118
|
2.6
|
115.8
|
1.0
|
|
CA
|
N:CYS1118
|
2.7
|
115.8
|
1.0
|
|
OG
|
N:SER1117
|
2.9
|
109.8
|
1.0
|
|
CB
|
N:CYS1115
|
3.2
|
103.2
|
1.0
|
|
SG
|
N:CYS1118
|
3.3
|
115.8
|
1.0
|
|
CB
|
N:CYS1089
|
3.4
|
117.1
|
1.0
|
|
C
|
N:SER1117
|
3.6
|
109.8
|
1.0
|
|
CA
|
N:CYS1092
|
3.7
|
117.4
|
1.0
|
|
N
|
N:CYS1092
|
3.8
|
117.4
|
1.0
|
|
OG
|
N:SER1097
|
4.0
|
102.5
|
1.0
|
|
C
|
N:CYS1118
|
4.1
|
115.8
|
1.0
|
|
CB
|
N:SER1117
|
4.1
|
109.8
|
1.0
|
|
CA
|
N:SER1117
|
4.3
|
109.8
|
1.0
|
|
N
|
N:SER1117
|
4.5
|
109.8
|
1.0
|
|
O
|
N:SER1117
|
4.5
|
109.8
|
1.0
|
|
CA
|
N:CYS1115
|
4.6
|
103.2
|
1.0
|
|
N
|
N:ALA1119
|
4.7
|
111.2
|
1.0
|
|
C
|
N:CYS1092
|
4.8
|
117.4
|
1.0
|
|
CA
|
N:CYS1089
|
4.8
|
117.1
|
1.0
|
|
O
|
N:CYS1118
|
4.8
|
115.8
|
1.0
|
|
C
|
N:CYS1115
|
4.8
|
103.2
|
1.0
|
|
Zinc binding site 10 out
of 12 in 7aod
Go back to
Zinc Binding Sites List in 7aod
Zinc binding site 10 out
of 12 in the Schizosaccharomyces Pombe Rna Polymerase I (Dimer)
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Schizosaccharomyces Pombe Rna Polymerase I (Dimer) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Zn201
b:220.2
occ:1.00
|
CB
|
U:CYS27
|
2.1
|
202.4
|
1.0
|
|
CB
|
U:CYS10
|
2.2
|
173.5
|
1.0
|
|
SG
|
U:CYS13
|
2.3
|
186.1
|
1.0
|
|
SG
|
U:CYS30
|
2.3
|
200.8
|
1.0
|
|
SG
|
U:CYS10
|
2.3
|
173.5
|
1.0
|
|
SG
|
U:CYS27
|
2.3
|
202.4
|
1.0
|
|
CD2
|
U:LEU17
|
3.4
|
167.5
|
1.0
|
|
CA
|
U:CYS27
|
3.5
|
202.4
|
1.0
|
|
CA
|
U:CYS10
|
3.7
|
173.5
|
1.0
|
|
CB
|
U:CYS13
|
4.0
|
186.1
|
1.0
|
|
N
|
U:CYS27
|
4.0
|
202.4
|
1.0
|
|
CB
|
U:CYS30
|
4.1
|
200.8
|
1.0
|
|
N
|
U:CYS13
|
4.3
|
186.1
|
1.0
|
|
CB
|
U:ASN15
|
4.3
|
168.4
|
1.0
|
|
O
|
U:CYS13
|
4.4
|
186.1
|
1.0
|
|
N
|
U:CYS10
|
4.4
|
173.5
|
1.0
|
|
CE2
|
U:TYR34
|
4.4
|
195.0
|
1.0
|
|
O
|
U:ASN15
|
4.4
|
168.4
|
1.0
|
|
CA
|
U:CYS13
|
4.5
|
186.1
|
1.0
|
|
C
|
U:CYS13
|
4.6
|
186.1
|
1.0
|
|
CG
|
U:LEU17
|
4.6
|
167.5
|
1.0
|
|
C
|
U:CYS27
|
4.6
|
202.4
|
1.0
|
|
C
|
U:CYS10
|
4.7
|
173.5
|
1.0
|
|
CB
|
U:SER32
|
4.7
|
194.8
|
1.0
|
|
N
|
U:ASN15
|
4.8
|
168.4
|
1.0
|
|
OH
|
U:TYR34
|
4.8
|
195.0
|
1.0
|
|
OG
|
U:SER32
|
4.8
|
194.8
|
1.0
|
|
N
|
U:SER11
|
4.9
|
169.8
|
1.0
|
|
N
|
U:SER32
|
5.0
|
194.8
|
1.0
|
|
Reference:
F.B.Heiss,
J.L.Daiss,
P.Becker,
C.Engel.
Conserved Strategies of Rna Polymerase I Hibernation and Activation. Nat Commun V. 12 758 2021.
ISSN: ESSN 2041-1723
PubMed: 33536435
DOI: 10.1038/S41467-021-21031-8
Page generated: Tue Oct 29 17:00:53 2024
|
