Zinc in PDB 7aoc: Schizosaccharomyces Pombe Rna Polymerase I (Monomer)

Enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Monomer)

All present enzymatic activity of Schizosaccharomyces Pombe Rna Polymerase I (Monomer):
2.7.7.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer) (pdb code 7aoc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer), PDB code: 7aoc:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 7aoc

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Zinc binding site 1 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1701

b:115.4
occ:1.00
 NE2 A:HIS76 2.0 79.0 1.0
SG A:CYS73 2.2 84.4 1.0
SG A:CYS66 2.3 95.5 1.0
SG A:CYS63 2.3 93.3 1.0
CD2 A:HIS76 2.5 79.0 1.0
CB A:CYS63 2.9 93.3 1.0
CB A:CYS66 3.0 95.5 1.0
CE1 A:HIS76 3.2 79.0 1.0
N A:CYS66 3.3 95.5 1.0
CG A:HIS76 3.7 79.0 1.0
CA A:CYS66 3.7 95.5 1.0
CB A:CYS73 3.8 84.4 1.0
CB A:THR65 3.9 92.8 1.0
ND1 A:HIS76 4.0 79.0 1.0
C A:THR65 4.2 92.8 1.0
CA A:CYS63 4.4 93.3 1.0
CA A:THR65 4.4 92.8 1.0
N A:THR65 4.4 92.8 1.0
OG1 A:THR65 4.4 92.8 1.0
C A:CYS63 4.7 93.3 1.0
C A:CYS66 4.8 95.5 1.0
CG2 A:THR65 4.9 92.8 1.0
O A:CYS63 4.9 93.3 1.0
CB A:HIS76 5.0 79.0 1.0
CA A:CYS73 5.0 84.4 1.0

Zinc binding site 2 out of 6 in 7aoc

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Zinc binding site 2 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1702

b:185.5
occ:1.00
 CB A:CYS231 1.9 111.4 1.0
CB A:CYS106 2.1 118.8 1.0
SG A:CYS103 2.3 111.0 1.0
SG A:CYS228 2.5 102.8 1.0
SG A:CYS231 2.5 111.4 1.0
CA A:CYS106 2.5 118.8 1.0
N A:CYS106 2.6 118.8 1.0
SG A:CYS106 3.1 118.8 1.0
CB A:CYS228 3.3 102.8 1.0
CA A:CYS231 3.4 111.4 1.0
C A:TYR105 3.4 117.4 1.0
OG A:SER233 3.5 111.8 1.0
N A:CYS231 3.9 111.4 1.0
CB A:CYS103 4.0 111.0 1.0
C A:CYS106 4.0 118.8 1.0
O A:TYR105 4.1 117.4 1.0
C A:CYS231 4.1 111.4 1.0
CB A:TYR105 4.2 117.4 1.0
CA A:TYR105 4.3 117.4 1.0
N A:GLN232 4.6 107.7 1.0
N A:SER233 4.7 111.8 1.0
O A:CYS106 4.7 118.8 1.0
N A:TYR105 4.7 117.4 1.0
CB A:SER233 4.7 111.8 1.0
O A:CYS231 4.7 111.4 1.0
N A:HIS107 4.8 100.3 1.0
CA A:CYS228 4.8 102.8 1.0

Zinc binding site 3 out of 6 in 7aoc

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Zinc binding site 3 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:133.9
occ:1.00
 OH A:TYR19 2.0 67.4 1.0
OG B:SER1117 2.0 82.5 1.0
CG2 A:ILE27 2.1 81.2 1.0
CB B:SER1117 2.1 82.5 1.0
OG B:SER1097 2.1 77.1 1.0
CB B:SER1097 2.2 77.1 1.0
CZ A:TYR19 3.4 67.4 1.0
CB A:ILE27 3.5 81.2 1.0
CA B:SER1117 3.5 82.5 1.0
CA B:SER1097 3.7 77.1 1.0
N B:SER1117 3.9 82.5 1.0
N B:SER1097 4.1 77.1 1.0
CE2 A:TYR19 4.1 67.4 1.0
CE1 A:TYR19 4.3 67.4 1.0
CA A:ILE27 4.4 81.2 1.0
CG1 A:ILE27 4.5 81.2 1.0
C B:SER1117 4.6 82.5 1.0
C B:SER1097 4.7 77.1 1.0
CD1 A:ILE27 4.7 81.2 1.0
CB B:SER1094 4.8 54.0 1.0
O A:ASP23 4.8 80.1 1.0
N A:ILE27 4.8 81.2 1.0
O B:SER1097 4.8 77.1 1.0
OG B:SER1094 5.0 54.0 1.0

Zinc binding site 4 out of 6 in 7aoc

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Zinc binding site 4 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:187.3
occ:1.00
 CB I:CYS27 2.1 128.8 1.0
SG I:CYS27 2.2 128.8 1.0
SG I:CYS30 2.3 125.5 1.0
SG I:CYS13 2.3 102.7 1.0
SG I:CYS10 2.3 100.7 1.0
CB I:CYS10 2.7 100.7 1.0
CA I:CYS27 3.6 128.8 1.0
O I:ASN15 3.8 93.0 1.0
CD2 I:LEU17 3.8 99.5 1.0
CB I:CYS30 4.0 125.5 1.0
CB I:CYS13 4.1 102.7 1.0
N I:CYS27 4.2 128.8 1.0
CA I:CYS10 4.2 100.7 1.0
CB I:ASN15 4.3 93.0 1.0
N I:CYS13 4.5 102.7 1.0
C I:CYS27 4.5 128.8 1.0
N I:ASN15 4.6 93.0 1.0
CA I:CYS13 4.7 102.7 1.0
N I:CYS30 4.7 125.5 1.0
OG I:SER32 4.7 112.6 1.0
C I:ASN15 4.7 93.0 1.0
CA I:ASN15 4.8 93.0 1.0
C I:CYS13 4.8 102.7 1.0
CA I:CYS30 4.9 125.5 1.0
O I:CYS13 4.9 102.7 1.0
CB I:SER32 5.0 112.6 1.0
N I:CYS10 5.0 100.7 1.0

Zinc binding site 5 out of 6 in 7aoc

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Zinc binding site 5 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:100.3
occ:1.00
 CB J:CYS10 2.1 3.5 1.0
SG J:CYS45 2.2 12.4 1.0
N J:CYS10 2.3 3.5 1.0
SG J:CYS7 2.4 3.4 1.0
SG J:CYS44 2.4 3.7 1.0
CA J:CYS10 2.6 3.5 1.0
SG J:CYS10 2.8 3.5 1.0
N J:CYS45 3.1 12.4 1.0
CB J:CYS45 3.4 12.4 1.0
CA J:CYS45 3.4 12.4 1.0
C J:CYS44 3.5 3.7 1.0
C J:SER9 3.5 3.2 1.0
C J:CYS10 3.6 3.5 1.0
CB J:CYS44 3.8 3.7 1.0
O J:CYS44 3.8 3.7 1.0
CB J:CYS7 3.8 3.4 1.0
N J:SER9 4.1 3.2 1.0
CB J:SER9 4.1 3.2 1.0
O J:CYS10 4.1 3.5 1.0
CA J:SER9 4.1 3.2 1.0
CA J:CYS44 4.3 3.7 1.0
N J:GLY11 4.4 3.0 1.0
O J:CYS7 4.5 3.4 1.0
C J:CYS7 4.5 3.4 1.0
O J:SER9 4.5 3.2 1.0
C J:PHE8 4.8 3.6 1.0
N J:PHE8 4.8 3.6 1.0
CA J:CYS7 4.9 3.4 1.0
C J:CYS45 4.9 12.4 1.0

Zinc binding site 6 out of 6 in 7aoc

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Zinc binding site 6 out of 6 in the Schizosaccharomyces Pombe Rna Polymerase I (Monomer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Schizosaccharomyces Pombe Rna Polymerase I (Monomer) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:65.6
occ:1.00
 SG L:CYS27 2.2 46.1 1.0
SG L:CYS41 2.3 37.2 1.0
SG L:CYS24 2.3 33.4 1.0
SG L:CYS44 2.4 45.9 1.0
CB L:CYS44 2.4 45.9 1.0
CB L:CYS27 2.5 46.1 1.0
CB L:CYS41 3.2 37.2 1.0
N L:CYS27 3.2 46.1 1.0
CA L:CYS27 3.5 46.1 1.0
CA L:CYS44 3.7 45.9 1.0
CB L:CYS24 3.7 33.4 1.0
N L:CYS44 3.8 45.9 1.0
CB L:HIS46 4.1 28.5 1.0
C L:ASP26 4.4 35.4 1.0
C L:CYS44 4.5 45.9 1.0
N L:HIS46 4.5 28.5 1.0
N L:GLY45 4.5 34.3 1.0
CB L:ASP26 4.6 35.4 1.0
C L:CYS27 4.6 46.1 1.0
CA L:CYS41 4.7 37.2 1.0
N L:ASP26 4.8 35.4 1.0
CA L:ASP26 4.9 35.4 1.0
C L:GLU43 4.9 50.0 1.0
N L:GLY28 4.9 45.2 1.0
CA L:HIS46 5.0 28.5 1.0

Reference:

F.B.Heiss, J.L.Daiss, P.Becker, C.Engel. Conserved Strategies of Rna Polymerase I Hibernation and Activation. Nat Commun V. 12 758 2021.
ISSN: ESSN 2041-1723
PubMed: 33536435
DOI: 10.1038/S41467-021-21031-8
Page generated: Tue Oct 29 17:00:52 2024

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