Zinc in PDB 6zpt: Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
Enzymatic activity of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
All present enzymatic activity of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.:
3.4.15.1;
Protein crystallography data
The structure of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain., PDB code: 6zpt
was solved by
G.E.Cozier,
K.R.Acharya,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
69.05 /
2.80
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.650,
99.257,
127.980,
98.63,
89.63,
111.15
|
R / Rfree (%)
|
22.4 /
27.8
|
Other elements in 6zpt:
The structure of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain. also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
(pdb code 6zpt). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain., PDB code: 6zpt:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 6zpt
Go back to
Zinc Binding Sites List in 6zpt
Zinc binding site 1 out
of 4 in the Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn704
b:37.6
occ:1.00
|
NE2
|
A:HIS365
|
2.0
|
38.5
|
1.0
|
NE2
|
A:HIS361
|
2.3
|
47.7
|
1.0
|
OE1
|
A:GLU389
|
2.4
|
49.6
|
1.0
|
OE2
|
A:GLU389
|
2.7
|
45.8
|
1.0
|
O
|
A:HOH814
|
2.8
|
29.9
|
1.0
|
CD
|
A:GLU389
|
2.9
|
49.0
|
1.0
|
HD2
|
A:HIS361
|
2.9
|
68.4
|
1.0
|
CD2
|
A:HIS361
|
3.0
|
57.0
|
1.0
|
CE1
|
A:HIS365
|
3.0
|
44.5
|
1.0
|
CD2
|
A:HIS365
|
3.0
|
49.8
|
1.0
|
HE1
|
A:HIS365
|
3.2
|
53.4
|
1.0
|
HD2
|
A:HIS365
|
3.2
|
59.7
|
1.0
|
CE1
|
A:HIS361
|
3.5
|
40.2
|
1.0
|
OE2
|
A:GLU362
|
3.7
|
42.6
|
1.0
|
HE1
|
A:HIS361
|
3.8
|
48.2
|
1.0
|
HA
|
A:GLU389
|
3.9
|
54.0
|
1.0
|
ND1
|
A:HIS365
|
4.1
|
48.5
|
1.0
|
CG
|
A:HIS365
|
4.2
|
47.5
|
1.0
|
CG
|
A:HIS361
|
4.3
|
52.3
|
1.0
|
CG
|
A:GLU389
|
4.4
|
47.6
|
1.0
|
CD
|
A:GLU362
|
4.4
|
47.3
|
1.0
|
ND1
|
A:HIS361
|
4.5
|
52.6
|
1.0
|
OE1
|
A:GLU362
|
4.6
|
46.8
|
1.0
|
HG2
|
A:GLU389
|
4.6
|
57.1
|
1.0
|
HA3
|
A:GLY392
|
4.8
|
53.1
|
1.0
|
H42
|
A:BCN701
|
4.8
|
70.7
|
1.0
|
CA
|
A:GLU389
|
4.8
|
45.0
|
1.0
|
HA
|
A:GLU362
|
4.8
|
51.7
|
1.0
|
HG3
|
A:GLU389
|
4.9
|
57.1
|
1.0
|
HD1
|
A:HIS365
|
4.9
|
58.2
|
1.0
|
HO4
|
A:BCN701
|
4.9
|
83.5
|
1.0
|
|
Zinc binding site 2 out
of 4 in 6zpt
Go back to
Zinc Binding Sites List in 6zpt
Zinc binding site 2 out
of 4 in the Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn706
b:49.5
occ:1.00
|
OE1
|
B:GLU389
|
1.8
|
51.2
|
1.0
|
NE2
|
B:HIS365
|
2.1
|
45.7
|
1.0
|
NE2
|
B:HIS361
|
2.1
|
43.3
|
1.0
|
CD
|
B:GLU389
|
2.8
|
44.0
|
1.0
|
CD2
|
B:HIS365
|
2.8
|
51.8
|
1.0
|
O
|
B:HOH810
|
2.8
|
44.3
|
1.0
|
HD2
|
B:HIS365
|
2.9
|
62.2
|
1.0
|
CD2
|
B:HIS361
|
2.9
|
48.2
|
1.0
|
HD2
|
B:HIS361
|
2.9
|
57.8
|
1.0
|
CE1
|
B:HIS365
|
3.2
|
44.4
|
1.0
|
OE2
|
B:GLU389
|
3.2
|
44.4
|
1.0
|
CE1
|
B:HIS361
|
3.3
|
47.1
|
1.0
|
HE1
|
B:HIS365
|
3.5
|
53.3
|
1.0
|
HE1
|
B:HIS361
|
3.6
|
56.5
|
1.0
|
OE2
|
B:GLU362
|
3.9
|
48.9
|
1.0
|
HA
|
B:GLU389
|
3.9
|
61.6
|
1.0
|
HG2
|
B:GLU389
|
4.0
|
49.2
|
1.0
|
CG
|
B:HIS365
|
4.0
|
42.1
|
1.0
|
CG
|
B:GLU389
|
4.0
|
41.0
|
1.0
|
CG
|
B:HIS361
|
4.1
|
53.1
|
1.0
|
OE1
|
B:GLU362
|
4.2
|
49.9
|
1.0
|
ND1
|
B:HIS365
|
4.2
|
44.4
|
1.0
|
ND1
|
B:HIS361
|
4.3
|
48.6
|
1.0
|
CD
|
B:GLU362
|
4.3
|
48.1
|
1.0
|
HG3
|
B:GLU389
|
4.7
|
49.2
|
1.0
|
HA
|
B:GLU362
|
4.7
|
57.9
|
1.0
|
CA
|
B:GLU389
|
4.8
|
51.4
|
1.0
|
HA3
|
B:GLY392
|
4.8
|
53.5
|
1.0
|
CB
|
B:GLU389
|
4.9
|
46.8
|
1.0
|
HD1
|
B:HIS365
|
5.0
|
53.3
|
1.0
|
|
Zinc binding site 3 out
of 4 in 6zpt
Go back to
Zinc Binding Sites List in 6zpt
Zinc binding site 3 out
of 4 in the Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn707
b:44.0
occ:1.00
|
OE1
|
C:GLU389
|
1.9
|
42.4
|
1.0
|
NE2
|
C:HIS365
|
2.1
|
36.1
|
1.0
|
NE2
|
C:HIS361
|
2.3
|
44.1
|
1.0
|
CD
|
C:GLU389
|
2.8
|
53.4
|
1.0
|
CE1
|
C:HIS365
|
2.9
|
36.7
|
1.0
|
HE1
|
C:HIS365
|
3.0
|
44.0
|
1.0
|
OE2
|
C:GLU389
|
3.1
|
60.0
|
1.0
|
CD2
|
C:HIS361
|
3.2
|
45.3
|
1.0
|
CD2
|
C:HIS365
|
3.2
|
39.8
|
1.0
|
HD2
|
C:HIS361
|
3.3
|
54.4
|
1.0
|
CE1
|
C:HIS361
|
3.4
|
49.9
|
1.0
|
OE2
|
C:GLU362
|
3.4
|
66.3
|
1.0
|
HD2
|
C:HIS365
|
3.5
|
47.8
|
1.0
|
HE1
|
C:HIS361
|
3.6
|
59.8
|
1.0
|
HA
|
C:GLU389
|
4.0
|
54.2
|
1.0
|
CD
|
C:GLU362
|
4.1
|
63.4
|
1.0
|
ND1
|
C:HIS365
|
4.1
|
41.0
|
1.0
|
OE1
|
C:GLU362
|
4.1
|
58.6
|
1.0
|
CG
|
C:GLU389
|
4.2
|
41.8
|
1.0
|
HG2
|
C:GLU389
|
4.3
|
50.2
|
1.0
|
CG
|
C:HIS365
|
4.3
|
37.6
|
1.0
|
CG
|
C:HIS361
|
4.4
|
53.3
|
1.0
|
ND1
|
C:HIS361
|
4.5
|
49.5
|
1.0
|
HA
|
C:GLU362
|
4.7
|
53.1
|
1.0
|
HA3
|
C:GLY392
|
4.7
|
58.2
|
1.0
|
HG3
|
C:GLU389
|
4.8
|
50.2
|
1.0
|
HD1
|
C:HIS365
|
4.9
|
49.2
|
1.0
|
CA
|
C:GLU389
|
4.9
|
45.1
|
1.0
|
H42
|
C:BCN706
|
5.0
|
81.0
|
1.0
|
|
Zinc binding site 4 out
of 4 in 6zpt
Go back to
Zinc Binding Sites List in 6zpt
Zinc binding site 4 out
of 4 in the Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain.
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of the Open Conformation of S2_S'-Mutant Human Angiotensin-1 Converting Enzyme N-Domain. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn705
b:57.6
occ:1.00
|
OE1
|
D:GLU389
|
1.9
|
45.2
|
1.0
|
NE2
|
D:HIS361
|
2.1
|
60.0
|
1.0
|
NE2
|
D:HIS365
|
2.3
|
54.4
|
1.0
|
CD
|
D:GLU389
|
2.7
|
47.7
|
1.0
|
CD2
|
D:HIS361
|
3.0
|
59.9
|
1.0
|
OE2
|
D:GLU389
|
3.0
|
45.0
|
1.0
|
HD2
|
D:HIS361
|
3.1
|
71.8
|
1.0
|
CD2
|
D:HIS365
|
3.1
|
54.8
|
1.0
|
HD2
|
D:HIS365
|
3.1
|
65.8
|
1.0
|
CE1
|
D:HIS361
|
3.2
|
55.1
|
1.0
|
CE1
|
D:HIS365
|
3.4
|
56.0
|
1.0
|
HE1
|
D:HIS361
|
3.4
|
66.1
|
1.0
|
HE1
|
D:HIS365
|
3.7
|
67.2
|
1.0
|
O
|
D:HOH808
|
3.9
|
51.4
|
1.0
|
OE1
|
D:GLU362
|
3.9
|
56.1
|
1.0
|
OE2
|
D:GLU362
|
4.0
|
50.8
|
1.0
|
CG
|
D:GLU389
|
4.1
|
43.1
|
1.0
|
HG2
|
D:GLU389
|
4.1
|
51.7
|
1.0
|
HA
|
D:GLU389
|
4.2
|
61.7
|
1.0
|
CG
|
D:HIS361
|
4.2
|
56.4
|
1.0
|
ND1
|
D:HIS361
|
4.2
|
48.2
|
1.0
|
CD
|
D:GLU362
|
4.3
|
55.6
|
1.0
|
CG
|
D:HIS365
|
4.3
|
53.5
|
1.0
|
ND1
|
D:HIS365
|
4.4
|
53.7
|
1.0
|
HG3
|
D:GLU389
|
4.6
|
51.7
|
1.0
|
HA
|
D:GLU362
|
4.7
|
65.7
|
1.0
|
HA3
|
D:GLY392
|
5.0
|
58.7
|
1.0
|
|
Reference:
G.E.Cozier,
L.Lubbe,
E.D.Sturrock,
K.R.Acharya.
Angiotensin-Converting Enzyme Open For Business: Structural Insights Into the Sub-Domain Dynamics. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 33067882
DOI: 10.1111/FEBS.15601
Page generated: Tue Oct 29 15:52:51 2024
|