Zinc in PDB 6wp2: The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii

The structure of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii, PDB code: 6wp2 was solved by A.Ghanbarpour, J.Geiger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.17 / 2.48
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.513, 74.451, 94.345, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 31.2

The binding sites of Zinc atom in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii (pdb code 6wp2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii, PDB code: 6wp2:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:49.0 occ:1.00 ZN A:ZN204 1.8 31.9 0.7 ZN A:ZN203 1.9 35.5 0.5 NE2 A:HIS57 2.2 43.5 0.7 NE2 B:HIS57 2.3 44.7 0.1 CE1 A:HIS57 2.4 45.5 0.3 NE2 A:HIS57 2.4 44.7 0.3 NE2 C:HIS57 2.5 41.0 0.5 NE2 B:HIS57 2.5 43.2 0.9 NE2 C:HIS57 2.6 40.7 0.5 CE1 B:HIS57 2.9 47.5 0.9 CE1 C:HIS57 2.9 44.9 0.5 CE1 A:HIS57 3.0 48.6 0.7 CE1 C:HIS57 3.0 43.6 0.5 CE1 B:HIS57 3.0 47.0 0.1 CD2 A:HIS57 3.3 40.5 0.7 CD2 B:HIS57 3.6 44.2 0.1 ND1 A:HIS57 3.6 48.6 0.3 CD2 C:HIS57 3.7 41.7 0.5 CD2 A:HIS57 3.7 44.8 0.3 CD2 B:HIS57 3.8 41.3 0.9 CD2 C:HIS57 3.8 41.3 0.5 ND1 A:HIS57 4.2 49.8 0.7 ND1 B:HIS57 4.2 50.2 0.9 ND1 C:HIS57 4.2 45.6 0.5 ND1 B:HIS57 4.3 49.2 0.1 ND1 C:HIS57 4.3 43.9 0.5 CG A:HIS57 4.3 48.4 0.3 CG A:HIS57 4.4 48.9 0.7 CG B:HIS57 4.5 49.1 0.1 CG2 A:ILE32 4.6 44.5 1.0 CG B:HIS57 4.6 50.0 0.9 CG C:HIS57 4.6 46.0 0.5 CG C:HIS57 4.7 46.3 0.5 CG2 C:ILE32 4.7 42.1 1.0 CD2 A:LEU36 4.8 46.9 1.0 CG2 B:ILE32 5.0 28.1 1.0

Zinc binding site 2 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:56.6 occ:1.00 CD2 B:HIS57 4.0 41.3 0.9 CD2 A:HIS57 4.2 40.5 0.7 CD2 C:HIS57 4.2 41.3 0.5 CA B:THR56 4.2 43.4 1.0 N A:HIS57 4.3 62.0 1.0 CD2 A:HIS57 4.3 44.8 0.3 ZN A:ZN203 4.4 35.5 0.5 CD2 C:HIS57 4.4 41.7 0.5 CD2 B:HIS57 4.4 44.2 0.1 OG1 A:THR56 4.6 66.2 1.0 CA C:THR56 4.6 50.3 1.0 CA A:THR56 4.6 52.2 1.0 N B:HIS57 4.6 50.5 1.0 CG A:HIS57 4.6 48.4 0.3 CG2 C:THR56 4.7 40.6 1.0 CB C:THR56 4.7 47.6 1.0 N C:HIS57 4.8 50.4 1.0 N B:THR56 4.8 57.4 1.0 CB A:HIS57 4.8 49.4 0.3 NE2 B:HIS57 4.8 43.2 0.9 CB A:HIS57 4.8 49.4 0.7 CG A:HIS57 4.9 48.9 0.7 C B:THR56 4.9 55.7 1.0 CB B:THR56 4.9 56.5 1.0 C A:THR56 4.9 51.5 1.0 O C:SER55 4.9 40.1 1.0 NE2 C:HIS57 5.0 40.7 0.5

Zinc binding site 3 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:35.5 occ:0.49 NE2 B:HIS57 1.8 43.2 0.9 NE2 C:HIS57 1.9 41.0 0.5 NE2 A:HIS57 1.9 44.7 0.3 ZN A:ZN201 1.9 49.0 1.0 NE2 A:HIS57 1.9 43.5 0.7 NE2 C:HIS57 1.9 40.7 0.5 NE2 B:HIS57 2.0 44.7 0.1 CD2 A:HIS57 2.2 40.5 0.7 CE1 A:HIS57 2.3 45.5 0.3 CD2 B:HIS57 2.5 44.2 0.1 CD2 B:HIS57 2.6 41.3 0.9 CD2 C:HIS57 2.7 41.3 0.5 CD2 C:HIS57 2.7 41.7 0.5 CD2 A:HIS57 2.7 44.8 0.3 CE1 C:HIS57 2.9 43.6 0.5 CE1 B:HIS57 2.9 47.5 0.9 CE1 C:HIS57 3.0 44.9 0.5 ND1 A:HIS57 3.2 48.6 0.3 CE1 B:HIS57 3.2 47.0 0.1 CE1 A:HIS57 3.2 48.6 0.7 CG A:HIS57 3.4 48.4 0.3 CG A:HIS57 3.5 48.9 0.7 ZN A:ZN204 3.7 31.9 0.7 CG B:HIS57 3.8 49.1 0.1 CG B:HIS57 3.8 50.0 0.9 CG C:HIS57 3.8 46.0 0.5 CG C:HIS57 3.9 46.3 0.5 ND1 C:HIS57 3.9 43.9 0.5 ND1 B:HIS57 3.9 50.2 0.9 ND1 A:HIS57 4.0 49.8 0.7 ND1 C:HIS57 4.0 45.6 0.5 ND1 B:HIS57 4.1 49.2 0.1 ZN A:ZN202 4.4 56.6 1.0 CD2 A:LEU36 4.7 46.9 1.0 CD2 B:LEU36 4.7 46.4 1.0 CB A:HIS57 4.8 49.4 0.3 CB A:HIS57 4.8 49.4 0.7

Zinc binding site 4 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:31.9 occ:0.67 ZN A:ZN201 1.8 49.0 1.0 CG2 A:ILE32 3.5 44.5 1.0 CE1 A:HIS57 3.5 45.5 0.3 NE2 A:HIS57 3.6 43.5 0.7 NE2 B:HIS57 3.7 44.7 0.1 CG2 C:ILE32 3.7 42.1 1.0 ZN A:ZN203 3.7 35.5 0.5 CE1 B:HIS57 3.8 47.0 0.1 CE1 A:HIS57 3.8 48.6 0.7 CE1 C:HIS57 3.8 44.9 0.5 CE1 B:HIS57 3.8 47.5 0.9 NE2 A:HIS57 3.8 44.7 0.3 NE2 C:HIS57 3.9 41.0 0.5 NE2 B:HIS57 4.0 43.2 0.9 CE1 C:HIS57 4.0 43.6 0.5 NE2 C:HIS57 4.0 40.7 0.5 CG2 B:ILE32 4.1 28.1 1.0 CG1 B:ILE32 4.2 39.0 1.0 CB A:ILE32 4.4 53.9 1.0 CG1 C:ILE32 4.4 48.4 1.0 CG1 A:ILE32 4.4 50.3 1.0 CB C:ILE32 4.6 45.2 1.0 CB B:ILE32 4.7 41.4 1.0 CA A:ILE32 4.7 43.4 1.0 ND1 A:HIS57 4.8 48.6 0.3 CD2 A:HIS57 4.9 40.5 0.7

Zinc binding site 5 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:68.5 occ:1.00 CG A:MET10 3.4 42.5 1.0 SD A:MET10 3.6 55.7 1.0 C A:GLU11 3.9 50.5 1.0 N A:SER12 3.9 52.3 1.0 CG2 A:THR37 4.2 58.5 1.0 CA A:GLU11 4.2 51.3 1.0 O A:GLU11 4.3 52.3 1.0 N A:GLU11 4.4 57.5 1.0 CA A:SER12 4.4 47.4 1.0 C A:SER12 4.5 50.5 1.0 C A:MET10 4.5 56.7 1.0 CB A:MET10 4.5 45.6 1.0 CB A:ASN13 4.6 42.8 1.0 O A:MET10 4.6 56.5 1.0 OG1 A:THR37 4.7 57.8 1.0 N A:ASN13 4.7 48.4 1.0 O A:SER12 4.9 44.9 1.0 CB A:THR37 4.9 42.6 1.0

Zinc binding site 6 out of 6 in the The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Crystal Structure of Apo Zinc-Bound Domain Swapped-Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:51.5 occ:1.00 CB A:ALA28 4.1 40.7 1.0 CD2 C:PHE27 4.2 63.7 1.0 CB B:ALA28 4.3 37.0 1.0 CB C:ALA28 4.3 43.9 1.0 CD2 B:PHE27 4.5 44.7 1.0 CD2 A:PHE27 4.7 52.5 1.0 CE2 C:PHE27 4.7 54.0 1.0 N A:ALA28 4.8 48.6 1.0 CA A:ALA28 4.8 46.4 1.0 N C:ALA28 4.9 40.7 1.0 N B:ALA28 4.9 45.9 1.0 CA C:ALA28 4.9 46.0 1.0 CA B:ALA28 4.9 48.0 1.0

A.Ghanbarpour, J.Geiger. The Crystal Structure of Apo Zinc-Bound Domain Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of Hcrbpii To Be Published.