Zinc in PDB 6s61: Apoferritin From Mouse at 1.84 Angstrom Resolution
Enzymatic activity of Apoferritin From Mouse at 1.84 Angstrom Resolution
All present enzymatic activity of Apoferritin From Mouse at 1.84 Angstrom Resolution:
1.16.3.1;
Other elements in 6s61:
The structure of Apoferritin From Mouse at 1.84 Angstrom Resolution also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the Apoferritin From Mouse at 1.84 Angstrom Resolution
(pdb code 6s61). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
Apoferritin From Mouse at 1.84 Angstrom Resolution, PDB code: 6s61:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 1 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:16.8
occ:1.00
|
ND1
|
A:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
A:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
A:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
A:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
A:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
A:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
A:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
A:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
A:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
A:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
A:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
A:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
A:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
A:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
A:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
A:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
A:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
A:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
A:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
A:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
A:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
A:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
A:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
A:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
A:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
A:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
A:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
A:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
A:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
A:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
A:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
A:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
A:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
A:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
A:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
A:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
A:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
A:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
A:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
A:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
A:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
A:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
A:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
A:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
A:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
A:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 2 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 2 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn202
b:16.8
occ:1.00
|
ND1
|
B:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
B:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
B:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
B:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
B:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
B:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
B:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
B:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
B:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
B:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
B:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
B:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
B:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
B:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
B:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
B:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
B:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
B:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
B:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
B:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
B:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
B:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
B:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
B:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
B:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
B:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
B:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
B:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
B:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
B:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
B:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
B:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
B:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
B:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
B:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
B:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
B:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
B:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
B:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
B:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
B:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
B:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
B:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
B:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
B:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
B:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 3 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 3 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn202
b:16.8
occ:1.00
|
ND1
|
C:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
C:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
C:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
C:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
C:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
C:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
C:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
C:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
C:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
C:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
C:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
C:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
C:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
C:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
C:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
C:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
C:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
C:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
C:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
C:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
C:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
C:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
C:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
C:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
C:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
C:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
C:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
C:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
C:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
C:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
C:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
C:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
C:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
C:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
C:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
C:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
C:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
C:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
C:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
C:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
C:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
C:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
C:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
C:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
C:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
C:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 4 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 4 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn202
b:16.8
occ:1.00
|
ND1
|
D:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
D:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
D:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
D:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
D:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
D:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
D:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
D:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
D:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
D:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
D:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
D:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
D:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
D:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
D:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
D:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
D:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
D:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
D:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
D:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
D:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
D:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
D:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
D:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
D:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
D:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
D:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
D:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
D:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
D:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
D:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
D:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
D:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
D:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
D:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
D:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
D:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
D:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
D:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
D:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
D:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
D:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
D:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
D:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
D:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
D:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 5 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 5 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn201
b:16.8
occ:1.00
|
ND1
|
E:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
E:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
E:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
E:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
E:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
E:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
E:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
E:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
E:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
E:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
E:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
E:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
E:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
E:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
E:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
E:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
E:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
E:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
E:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
E:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
E:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
E:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
E:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
E:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
E:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
E:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
E:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
E:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
E:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
E:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
E:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
E:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
E:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
E:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
E:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
E:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
E:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
E:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
E:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
E:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
E:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
E:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
E:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
E:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
E:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
E:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 6 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 6 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn201
b:16.8
occ:1.00
|
ND1
|
F:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
F:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
F:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
F:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
F:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
F:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
F:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
F:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
F:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
F:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
F:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
F:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
F:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
F:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
F:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
F:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
F:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
F:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
F:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
F:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
F:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
F:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
F:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
F:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
F:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
F:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
F:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
F:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
F:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
F:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
F:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
F:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
F:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
F:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
F:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
F:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
F:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
F:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
F:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
F:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
F:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
F:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
F:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
F:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
F:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
F:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 7 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 7 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn201
b:16.8
occ:1.00
|
ND1
|
G:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
G:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
G:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
G:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
G:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
G:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
G:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
G:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
G:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
G:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
G:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
G:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
G:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
G:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
G:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
G:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
G:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
G:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
G:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
G:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
G:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
G:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
G:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
G:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
G:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
G:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
G:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
G:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
G:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
G:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
G:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
G:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
G:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
G:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
G:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
G:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
G:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
G:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
G:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
G:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
G:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
G:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
G:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
G:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
G:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
G:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 8 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 8 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn201
b:16.8
occ:1.00
|
ND1
|
H:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
H:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
H:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
H:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
H:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
H:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
H:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
H:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
H:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
H:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
H:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
H:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
H:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
H:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
H:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
H:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
H:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
H:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
H:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
H:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
H:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
H:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
H:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
H:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
H:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
H:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
H:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
H:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
H:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
H:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
H:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
H:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
H:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
H:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
H:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
H:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
H:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
H:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
H:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
H:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
H:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
H:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
H:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
H:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
H:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
H:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 9 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 9 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:16.8
occ:1.00
|
ND1
|
I:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
I:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
I:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
I:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
I:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
I:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
I:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
I:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
I:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
I:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
I:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
I:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
I:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
I:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
I:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
I:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
I:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
I:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
I:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
I:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
I:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
I:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
I:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
I:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
I:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
I:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
I:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
I:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
I:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
I:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
I:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
I:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
I:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
I:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
I:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
I:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
I:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
I:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
I:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
I:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
I:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
I:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
I:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
I:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
I:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
I:HIS65
|
5.0
|
4.2
|
1.0
|
|
Zinc binding site 10 out
of 24 in 6s61
Go back to
Zinc Binding Sites List in 6s61
Zinc binding site 10 out
of 24 in the Apoferritin From Mouse at 1.84 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Apoferritin From Mouse at 1.84 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn201
b:16.8
occ:1.00
|
ND1
|
J:HIS65
|
2.1
|
4.2
|
1.0
|
|
OE2
|
J:GLU27
|
2.1
|
4.0
|
1.0
|
|
OE1
|
J:GLU62
|
2.2
|
3.9
|
1.0
|
|
O
|
J:HOH2293
|
2.5
|
5.6
|
1.0
|
|
O
|
J:HOH2206
|
2.5
|
30.0
|
1.0
|
|
CD
|
J:GLU27
|
2.9
|
4.0
|
1.0
|
|
CG
|
J:HIS65
|
3.0
|
4.2
|
1.0
|
|
HB3
|
J:HIS65
|
3.1
|
4.2
|
1.0
|
|
CE1
|
J:HIS65
|
3.1
|
4.2
|
1.0
|
|
HB2
|
J:HIS65
|
3.1
|
4.2
|
1.0
|
|
OE1
|
J:GLU27
|
3.1
|
4.0
|
1.0
|
|
CD
|
J:GLU62
|
3.2
|
3.9
|
1.0
|
|
CB
|
J:HIS65
|
3.3
|
4.2
|
1.0
|
|
HE1
|
J:HIS65
|
3.3
|
4.2
|
1.0
|
|
OE2
|
J:GLU62
|
3.5
|
3.9
|
1.0
|
|
HA
|
J:GLU62
|
3.6
|
3.9
|
1.0
|
|
HG11
|
J:VAL110
|
3.6
|
4.2
|
1.0
|
|
O
|
J:HOH2205
|
3.7
|
30.0
|
1.0
|
|
OE1
|
J:GLN141
|
3.7
|
4.8
|
1.0
|
|
CD2
|
J:HIS65
|
4.2
|
4.2
|
1.0
|
|
NE2
|
J:HIS65
|
4.2
|
4.2
|
1.0
|
|
HD1
|
J:TYR137
|
4.2
|
4.8
|
1.0
|
|
HE1
|
J:TYR137
|
4.2
|
4.8
|
1.0
|
|
CG
|
J:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
J:GLU27
|
4.3
|
4.0
|
1.0
|
|
HB3
|
J:GLU62
|
4.4
|
3.9
|
1.0
|
|
CG
|
J:GLU62
|
4.4
|
3.9
|
1.0
|
|
CA
|
J:GLU62
|
4.5
|
3.9
|
1.0
|
|
CG1
|
J:VAL110
|
4.5
|
4.2
|
1.0
|
|
HG12
|
J:VAL110
|
4.5
|
4.2
|
1.0
|
|
CD
|
J:GLN141
|
4.6
|
4.8
|
1.0
|
|
HA
|
J:GLU27
|
4.6
|
4.0
|
1.0
|
|
OE1
|
J:GLU140
|
4.6
|
5.4
|
1.0
|
|
HG3
|
J:GLU27
|
4.6
|
4.0
|
1.0
|
|
CB
|
J:GLU62
|
4.6
|
3.9
|
1.0
|
|
O
|
J:HOH2216
|
4.7
|
30.0
|
1.0
|
|
CB
|
J:GLU27
|
4.8
|
4.0
|
1.0
|
|
CA
|
J:HIS65
|
4.8
|
4.2
|
1.0
|
|
HG13
|
J:VAL110
|
4.9
|
4.2
|
1.0
|
|
CD1
|
J:TYR137
|
4.9
|
4.8
|
1.0
|
|
CE1
|
J:TYR137
|
4.9
|
4.8
|
1.0
|
|
O
|
J:GLU62
|
4.9
|
3.9
|
1.0
|
|
HG2
|
J:GLU27
|
4.9
|
4.0
|
1.0
|
|
HG3
|
J:GLU62
|
5.0
|
3.9
|
1.0
|
|
HE2
|
J:HIS65
|
5.0
|
4.2
|
1.0
|
|
HD2
|
J:HIS65
|
5.0
|
4.2
|
1.0
|
|
Reference:
J.Vonck,
D.J.Mills,
O.Pfeil-Gardiner.
To Be Published Later To Be Published.
Page generated: Tue Oct 29 07:02:06 2024
|
