Zinc in PDB 6n7p: S. Cerevisiae Spliceosomal E Complex (UBC4)

The binding sites of Zinc atom in the S. Cerevisiae Spliceosomal E Complex (UBC4) (pdb code 6n7p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the S. Cerevisiae Spliceosomal E Complex (UBC4), PDB code: 6n7p:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the S. Cerevisiae Spliceosomal E Complex (UBC4)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of S. Cerevisiae Spliceosomal E Complex (UBC4) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:53.7 occ:1.00 ND1 B:HIS30 2.1 18.8 1.0 NE2 B:HIS24 2.1 27.2 1.0 SG B:CYS6 2.3 27.2 1.0 CB B:CYS9 2.3 25.4 1.0 CE1 B:HIS24 2.5 27.2 1.0 SG B:CYS9 2.7 25.4 1.0 CE1 B:HIS30 3.0 18.8 1.0 CG B:HIS30 3.1 18.8 1.0 CB B:CYS6 3.4 27.2 1.0 CD2 B:HIS24 3.4 27.2 1.0 CB B:HIS30 3.4 18.8 1.0 CA B:CYS9 3.6 25.4 1.0 ND1 B:HIS24 3.8 27.2 1.0 N B:CYS9 3.9 25.4 1.0 CA B:HIS30 4.0 18.8 1.0 NE2 B:HIS30 4.1 18.8 1.0 CD2 B:HIS30 4.2 18.8 1.0 CG B:HIS24 4.2 27.2 1.0 CA B:CYS6 4.8 27.2 1.0 C B:CYS9 4.8 25.4 1.0 OG B:SER11 4.8 33.1 1.0 N B:HIS30 4.9 18.8 1.0

Zinc binding site 2 out of 3 in the S. Cerevisiae Spliceosomal E Complex (UBC4)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of S. Cerevisiae Spliceosomal E Complex (UBC4) within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn501 b:0.4 occ:1.00 NE2 I:HIS72 2.0 87.4 1.0 SG I:CYS53 2.2 77.2 1.0 SG I:CYS68 2.3 89.4 1.0 SG I:CYS45 2.3 84.6 1.0 CE1 I:HIS72 2.8 87.4 1.0 CD2 I:HIS72 3.1 87.4 1.0 CB I:CYS53 3.1 77.2 1.0 CB I:CYS45 3.2 84.6 1.0 CB I:CYS68 3.8 89.4 1.0 OG I:SER47 3.8 83.1 1.0 CB I:TYR48 3.9 81.1 1.0 ND1 I:HIS72 4.0 87.4 1.0 CG I:HIS72 4.2 87.4 1.0 N I:TYR48 4.3 81.1 1.0 O I:GLN70 4.4 89.5 1.0 CA I:CYS53 4.5 77.2 1.0 CA I:CYS45 4.7 84.6 1.0 CA I:TYR48 4.7 81.1 1.0

Zinc binding site 3 out of 3 in the S. Cerevisiae Spliceosomal E Complex (UBC4)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of S. Cerevisiae Spliceosomal E Complex (UBC4) within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn502 b:85.0 occ:1.00 ND1 I:HIS226 2.0 60.0 1.0 NE2 I:HIS220 2.0 58.8 1.0 SG I:CYS204 2.2 72.2 1.0 SG I:CYS201 2.3 73.7 1.0 CE1 I:HIS226 2.4 60.0 1.0 CE1 I:HIS220 2.9 58.8 1.0 CG I:HIS226 3.0 60.0 1.0 CD2 I:HIS220 3.1 58.8 1.0 NE2 I:HIS226 3.4 60.0 1.0 CB I:CYS201 3.4 73.7 1.0 CB I:CYS204 3.4 72.2 1.0 CD2 I:HIS226 3.7 60.0 1.0 CB I:HIS226 3.8 60.0 1.0 ND1 I:HIS220 4.1 58.8 1.0 CG I:HIS220 4.2 58.8 1.0 N I:CYS204 4.3 72.2 1.0 CA I:CYS204 4.5 72.2 1.0 CE1 I:PHE221 4.5 62.1 1.0 CD1 I:PHE221 4.6 62.1 1.0 CA I:HIS226 4.7 60.0 1.0 CA I:CYS201 4.8 73.7 1.0

X.Li, S.Liu, L.Zhang, A.Issaian, R.C.Hill, S.Espinosa, S.Shi, Y.Cui, K.Kappel, R.Das, K.C.Hansen, Z.H.Zhou, R.Zhao. A Unified Mechanism For Intron and Exon Definition and Back-Splicing. Nature V. 573 375 2019.
ISSN: ESSN 1476-4687
PubMed: 31485080
DOI: 10.1038/S41586-019-1523-6