Atomistry » Zinc » PDB 6jqe-6kaj » 6jqe
Atomistry »
  Zinc »
    PDB 6jqe-6kaj »
      6jqe »

Zinc in PDB 6jqe: The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus

Enzymatic activity of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus

All present enzymatic activity of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus:
4.2.1.1;

Protein crystallography data

The structure of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus, PDB code: 6jqe was solved by M.S.Jin, S.Kim, N.J.Kim, S.Hong, S.Kim, J.Sung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.23 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.240, 57.298, 73.147, 90.00, 112.13, 90.00
R / Rfree (%) 20.5 / 25.2

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus (pdb code 6jqe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus, PDB code: 6jqe:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6jqe

Go back to Zinc Binding Sites List in 6jqe
Zinc binding site 1 out of 3 in the The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:26.6
occ:1.00
 NE2 A:HIS89 2.0 19.4 1.0
OD1 A:ASP36 2.1 31.9 1.0
SG A:CYS34 2.3 24.9 1.0
SG A:CYS92 2.4 26.7 1.0
CE1 A:HIS89 3.0 23.4 1.0
CD2 A:HIS89 3.0 21.5 1.0
CG A:ASP36 3.0 32.5 1.0
CB A:CYS34 3.0 26.7 1.0
CB A:CYS92 3.2 28.5 1.0
OD2 A:ASP36 3.4 35.3 1.0
CA A:CYS92 3.7 28.3 1.0
ND1 A:HIS89 4.1 23.7 1.0
CG A:HIS89 4.1 20.9 1.0
O A:HOH306 4.2 23.6 1.0
CB A:ASP36 4.3 29.6 1.0
N A:ASP36 4.3 26.1 1.0
C A:ASP36 4.4 29.6 1.0
N A:SER37 4.4 26.9 1.0
N A:HIS93 4.4 29.0 1.0
CA A:CYS34 4.4 24.8 1.0
C A:CYS92 4.5 26.4 1.0
CA A:ASP36 4.5 27.4 1.0
CD1 A:ILE94 4.8 38.8 1.0
C A:CYS34 4.8 23.9 1.0
OD1 A:ASN60 4.8 24.7 1.0
N A:ILE94 4.8 32.0 1.0
O A:ASP36 4.8 25.1 1.0
CA A:GLY59 4.9 33.8 1.0
N A:CYS92 4.9 32.5 1.0
CB A:ILE94 4.9 36.9 1.0
CB A:SER37 5.0 30.8 1.0

Zinc binding site 2 out of 3 in 6jqe

Go back to Zinc Binding Sites List in 6jqe
Zinc binding site 2 out of 3 in the The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:55.3
occ:1.00
 O B:HOH302 2.1 53.9 1.0
SG A:CYS39 2.4 45.3 1.0
SG B:CYS39 2.4 44.2 1.0
CB A:CYS39 3.0 44.6 1.0
CB B:CYS39 3.2 43.5 1.0
CA A:CYS39 3.4 43.9 1.0
CA B:CYS39 3.5 44.2 1.0
OE2 B:GLU54 3.9 44.8 1.0
OE1 B:GLU54 4.0 36.0 1.0
OE2 A:GLU54 4.0 45.4 1.0
OE1 A:GLU54 4.1 36.2 1.0
N A:CYS39 4.1 47.0 1.0
O B:HOH307 4.1 56.7 1.0
N B:CYS39 4.2 48.1 1.0
CD B:GLU54 4.4 43.6 1.0
CD1 B:LEU42 4.4 44.0 1.0
CD1 A:LEU42 4.5 36.4 1.0
CD A:GLU54 4.5 37.6 1.0
C A:CYS39 4.7 41.4 1.0
C B:CYS39 4.8 45.0 1.0
O B:CYS39 4.9 48.2 1.0
O A:CYS39 4.9 42.7 1.0

Zinc binding site 3 out of 3 in 6jqe

Go back to Zinc Binding Sites List in 6jqe
Zinc binding site 3 out of 3 in the The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structural Basis of the Beta-Carbonic Anhydrases Cafd (Wild Type) of the Filamentous Fungus Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:25.6
occ:1.00
 NE2 B:HIS89 2.0 21.4 1.0
OD1 B:ASP36 2.0 25.9 1.0
SG B:CYS34 2.3 25.6 1.0
SG B:CYS92 2.3 25.7 1.0
CE1 B:HIS89 3.0 23.0 1.0
CG B:ASP36 3.0 28.2 1.0
CD2 B:HIS89 3.0 21.2 1.0
CB B:CYS34 3.1 21.9 1.0
CB B:CYS92 3.2 25.3 1.0
OD2 B:ASP36 3.3 31.1 1.0
CA B:CYS92 3.6 28.1 1.0
ND1 B:HIS89 4.1 22.4 1.0
CG B:HIS89 4.1 21.3 1.0
O B:HOH311 4.1 23.6 1.0
CB B:ASP36 4.2 27.7 1.0
N B:ASP36 4.3 26.8 1.0
N B:HIS93 4.3 31.8 1.0
C B:ASP36 4.4 28.4 1.0
C B:CYS92 4.4 28.8 1.0
N B:SER37 4.4 28.6 1.0
CA B:ASP36 4.5 28.9 1.0
CA B:CYS34 4.5 20.9 1.0
O B:ASP36 4.8 25.1 1.0
N B:ILE94 4.8 29.2 1.0
C B:CYS34 4.8 21.9 1.0
OD1 B:ASN60 4.8 23.3 1.0
O B:HOH330 4.8 45.2 1.0
CA B:GLY59 4.8 21.8 1.0
N B:CYS92 4.9 27.5 1.0
CD1 B:ILE94 4.9 34.4 1.0
CB B:ILE94 4.9 32.0 1.0

Reference:

S.Kim, N.J.Kim, S.Hong, S.Kim, J.Sung, M.S.Jin. The Structural Basis of the Low Catalytic Activities of the Two Minor Beta-Carbonic Anhydrases of the Filamentous Fungus Aspergillus Fumigatus. J.Struct.Biol. V. 208 61 2019.
ISSN: ESSN 1095-8657
PubMed: 31376470
DOI: 10.1016/J.JSB.2019.07.011
Page generated: Tue Oct 29 01:22:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy