Zinc in PDB 6gni: Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model.

The structure of Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. (pdb code 6gni). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model., PDB code: 6gni:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:42.7 occ:1.00 SG A:CYS56 2.4 36.6 1.0 SG A:CYS61 2.4 44.9 1.0 SG A:CYS80 2.4 40.9 1.0 SG A:CYS83 2.4 42.3 1.0 CB A:CYS80 3.1 39.6 1.0 CB A:CYS56 3.3 36.3 1.0 CB A:CYS61 3.4 46.9 1.0 CB A:CYS83 3.5 42.7 1.0 N A:CYS83 3.8 39.3 1.0 CB A:SER63 4.1 41.4 1.0 CA A:CYS83 4.2 42.0 1.0 OG A:SER85 4.3 49.4 1.0 OG A:SER63 4.3 42.7 1.0 CA A:GLY58 4.5 50.4 1.0 CA A:CYS80 4.5 39.7 1.0 CB A:ILE82 4.5 35.5 1.0 N A:GLY58 4.6 47.8 1.0 N A:SER63 4.6 41.4 1.0 ND2 A:ASN87 4.7 52.8 1.0 CA A:CYS56 4.8 36.7 1.0 CA A:CYS61 4.8 48.0 1.0 C A:ILE82 4.8 38.1 1.0 N A:ASN84 4.8 44.8 1.0 C A:CYS83 4.9 43.5 1.0 C A:CYS80 5.0 38.4 1.0 CA A:SER63 5.0 40.8 1.0

Zinc binding site 2 out of 2 in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn1001 b:36.3 occ:1.00 SG E:CYS253 2.4 39.4 1.0 SG E:CYS256 2.4 35.9 1.0 SG E:CYS231 2.4 36.5 1.0 SG E:CYS234 2.4 38.7 1.0 CB E:CYS253 3.0 39.5 1.0 CB E:CYS256 3.1 35.5 1.0 CB E:CYS234 3.1 33.6 1.0 CB E:CYS231 3.3 36.8 1.0 N E:CYS256 3.5 34.7 1.0 N E:CYS234 3.6 35.2 1.0 CA E:CYS256 3.8 33.4 1.0 CA E:CYS234 3.9 34.4 1.0 C E:CYS256 4.4 32.8 1.0 CA E:CYS253 4.5 38.9 1.0 C E:PHE255 4.5 34.9 1.0 CB E:PHE255 4.5 32.6 1.0 N E:ARG257 4.6 35.7 1.0 C E:CYS234 4.7 33.8 1.0 CB E:ARG233 4.7 37.2 1.0 C E:ARG233 4.7 36.0 1.0 CA E:CYS231 4.8 38.3 1.0 N E:LEU258 4.8 35.3 1.0 N E:ARG235 4.8 33.6 1.0 CB E:LEU258 4.8 34.9 1.0 CA E:PHE255 4.9 33.9 1.0 CB E:SER236 5.0 35.0 1.0

J.Hutchings, V.Stancheva, E.A.Miller, G.Zanetti. Subtomogram Averaging of Copii Assemblies Reveals How Coat Organization Dictates Membrane Shape. Nat Commun V. 9 4154 2018.
ISSN: ESSN 2041-1723
PubMed: 30297805
DOI: 10.1038/S41467-018-06577-4