Atomistry » Zinc » PDB 6ee7-6eok » 6ee8
Atomistry »
  Zinc »
    PDB 6ee7-6eok »
      6ee8 »

Zinc in PDB 6ee8: Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter

Enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter:
2.7.7.6;

Other elements in 6ee8:

The structure of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter (pdb code 6ee8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter, PDB code: 6ee8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ee8

Go back to Zinc Binding Sites List in 6ee8
Zinc binding site 1 out of 2 in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2000

b:0.8
occ:1.00
SG D:CYS968 2.4 0.5 1.0
SG D:CYS978 2.4 0.6 1.0
SG D:CYS891 2.4 0.1 1.0
SG D:CYS975 2.5 0.3 1.0
CB D:CYS968 2.6 0.5 1.0
CA D:CYS968 2.8 0.5 1.0
CB D:CYS978 3.1 0.6 1.0
CB D:CYS891 3.3 0.1 1.0
N D:ALA969 3.5 0.8 1.0
C D:CYS968 3.6 0.5 1.0
CB D:CYS975 3.7 0.3 1.0
N D:CYS968 3.9 0.5 1.0
N D:CYS975 4.1 0.3 1.0
N D:CYS891 4.3 0.1 1.0
CA D:CYS978 4.4 0.6 1.0
CA D:CYS975 4.4 0.3 1.0
CA D:CYS891 4.4 0.1 1.0
N D:CYS978 4.5 0.6 1.0
O D:THR967 4.5 0.2 1.0
C D:THR967 4.7 0.2 1.0
O D:CYS975 4.7 0.3 1.0
O D:CYS968 4.8 0.5 1.0
O D:SER964 4.8 0.5 1.0
C D:CYS975 4.9 0.3 1.0
N D:THR970 4.9 1.0 1.0
CA D:ALA969 4.9 0.8 1.0
CG2 D:THR893 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 6ee8

Go back to Zinc Binding Sites List in 6ee8
Zinc binding site 2 out of 2 in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2001

b:0.4
occ:1.00
N D:CYS62 2.2 0.7 1.0
SG D:CYS78 2.5 0.8 1.0
SG D:CYS62 2.5 0.7 1.0
SG D:CYS60 2.5 0.8 1.0
CB D:CYS78 2.6 0.8 1.0
N D:TYR61 2.7 1.0 1.0
CB D:CYS60 2.8 0.8 1.0
CA D:CYS62 3.0 0.7 1.0
CB D:CYS62 3.1 0.7 1.0
C D:TYR61 3.1 1.0 1.0
C D:CYS60 3.2 0.8 1.0
N D:GLY63 3.3 0.9 1.0
CA D:TYR61 3.4 1.0 1.0
C D:CYS62 3.6 0.7 1.0
CA D:CYS60 3.6 0.8 1.0
CA D:CYS78 4.0 0.8 1.0
CB D:TYR61 4.0 1.0 1.0
O D:CYS60 4.0 0.8 1.0
O D:TYR61 4.2 1.0 1.0
N D:CYS78 4.3 0.8 1.0
N D:LYS64 4.4 0.7 1.0
CB D:CYS75 4.5 0.3 1.0
CA D:GLY63 4.5 0.9 1.0
SG D:CYS75 4.7 0.3 1.0
O D:CYS62 4.7 0.7 1.0
N D:CYS60 4.7 0.8 1.0
C D:CYS78 5.0 0.8 1.0

Reference:

H.Boyaci, J.Chen, R.Jansen, S.A.Darst, E.A.Campbell. Structures of An Rna Polymerase Promoter Melting Intermediate Elucidate Dna Unwinding. Nature V. 565 382 2019.
ISSN: ESSN 1476-4687
PubMed: 30626968
DOI: 10.1038/S41586-018-0840-5
Page generated: Mon Oct 28 20:07:56 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy