Zinc in PDB 5kiv: Crystal Structure of Saumacro (SAV0325)

The structure of Crystal Structure of Saumacro (SAV0325), PDB code: 5kiv was solved by R.S.Williams, C.D.Appel, G.K.Feld, B.D.Wallace, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.98 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.823, 47.853, 134.950, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 19.4

The binding sites of Zinc atom in the Crystal Structure of Saumacro (SAV0325) (pdb code 5kiv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Saumacro (SAV0325), PDB code: 5kiv:

Zinc binding site 1 out of 1 in the Crystal Structure of Saumacro (SAV0325)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Saumacro (SAV0325) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:15.7 occ:1.00 ND1 A:HIS118 2.1 16.6 1.0 SG A:CYS113 2.3 14.1 1.0 SG A:CYS120 2.3 16.6 1.0 HB3 A:HIS118 2.8 20.2 1.0 HB2 A:CYS113 2.9 18.0 1.0 CE1 A:HIS118 3.0 17.7 1.0 CG A:HIS118 3.1 14.4 1.0 HB3 A:CYS120 3.2 25.1 1.0 HE1 A:HIS118 3.2 21.2 1.0 CB A:CYS113 3.2 15.0 1.0 CB A:CYS120 3.4 20.9 1.0 CB A:HIS118 3.4 16.8 1.0 HB2 A:ASN123 3.5 18.3 1.0 HB3 A:GLN115 3.7 16.0 1.0 HB2 A:HIS118 3.8 20.2 1.0 HB3 A:CYS113 3.9 18.0 1.0 HB2 A:CYS120 3.9 25.1 1.0 HA A:CYS113 4.0 17.4 1.0 HD22 A:ASN123 4.0 16.7 1.0 HB3 A:ASP122 4.2 20.1 1.0 NE2 A:HIS118 4.2 17.4 1.0 CA A:CYS113 4.2 14.5 1.0 H A:ASN123 4.2 17.3 1.0 O A:HOH445 4.2 20.4 1.0 CD2 A:HIS118 4.2 19.5 1.0 CB A:ASN123 4.5 15.3 1.0 H A:GLN115 4.5 17.0 1.0 OE1 A:GLN115 4.5 20.3 1.0 CB A:GLN115 4.6 13.3 1.0 CA A:CYS120 4.7 18.2 1.0 HB2 A:GLN115 4.7 16.0 1.0 H A:CYS120 4.7 19.1 1.0 CA A:HIS118 4.7 16.8 1.0 N A:CYS120 4.8 15.9 1.0 O A:HIS118 4.8 17.5 1.0 ND2 A:ASN123 4.8 13.9 1.0 O A:HOH511 4.8 15.5 1.0 HB3 A:ASN123 4.8 18.3 1.0 N A:ASN123 4.9 14.4 1.0 C A:HIS118 4.9 18.4 1.0 HE2 A:HIS118 4.9 20.8 1.0

C.D.Appel, G.K.Feld, B.D.Wallace, R.S.Williams. Structure of the Sirtuin-Linked Macrodomain SAV0325 From Staphylococcus Aureus. Protein Sci. V. 25 1682 2016.
ISSN: ESSN 1469-896X
PubMed: 27345688
DOI: 10.1002/PRO.2974