Atomistry » Zinc » PDB 4k99-4kjg » 4k99
Atomistry »
  Zinc »
    PDB 4k99-4kjg »
      4k99 »

Zinc in PDB 4k99: Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg

Protein crystallography data

The structure of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg, PDB code: 4k99 was solved by P.Gao, Y.Wu, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.18 / 1.95
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.124, 97.613, 131.372, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.2

Other elements in 4k99:

The structure of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg (pdb code 4k99). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg, PDB code: 4k99:

Zinc binding site 1 out of 1 in 4k99

Go back to Zinc Binding Sites List in 4k99
Zinc binding site 1 out of 1 in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Pppdg(2 , 5 )Pdg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:22.5
occ:1.00
NE2 A:HIS378 2.1 25.2 1.0
SG A:CYS385 2.4 17.1 1.0
SG A:CYS392 2.5 18.8 1.0
SG A:CYS384 2.5 16.7 1.0
CD2 A:HIS378 2.9 13.2 1.0
CB A:CYS385 3.2 16.2 1.0
CE1 A:HIS378 3.2 20.5 1.0
CB A:CYS392 3.4 19.6 1.0
N A:CYS385 3.6 18.2 1.0
CB A:CYS384 3.7 21.9 1.0
N A:CYS392 3.7 26.7 1.0
C A:CYS384 3.7 21.8 1.0
CA A:CYS385 4.0 21.0 1.0
O A:HOH772 4.0 32.5 1.0
CA A:CYS392 4.1 25.2 1.0
O A:CYS384 4.1 20.4 1.0
CG A:HIS378 4.1 18.9 1.0
CA A:CYS384 4.2 22.2 1.0
ND1 A:HIS378 4.3 17.7 1.0
NH1 A:ARG394 4.5 18.3 1.0
O A:HOH741 4.6 20.5 1.0
O A:HOH714 4.7 19.8 1.0
C A:CYS392 4.7 22.9 1.0
O A:ALA390 4.7 20.0 1.0
O A:CYS392 4.7 21.1 1.0
C A:LYS391 4.8 21.2 1.0
O D:HOH109 4.8 25.4 1.0

Reference:

P.Gao, M.Ascano, Y.Wu, W.Barchet, B.L.Gaffney, T.Zillinger, A.A.Serganov, Y.Liu, R.A.Jones, G.Hartmann, T.Tuschl, D.J.Patel. Cyclic [G(2',5')Pa(3',5')P] Is the Metazoan Second Messenger Produced By Dna-Activated Cyclic Gmp-Amp Synthase. Cell(Cambridge,Mass.) V. 153 1094 2013.
ISSN: ISSN 0092-8674
PubMed: 23647843
DOI: 10.1016/J.CELL.2013.04.046
Page generated: Wed Dec 16 05:28:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy