Zinc in PDB 4ii1: Crystal Structure of the Zinc Finger of Zgpat

The structure of Crystal Structure of the Zinc Finger of Zgpat, PDB code: 4ii1 was solved by C.Bian, W.Tempel, A.Dong, X.Chao, M.Fu, A.K.Wernimont, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.80 / 2.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.170, 87.070, 76.570, 90.00, 95.65, 90.00
R / Rfree (%)	20.8 / 24.2

The binding sites of Zinc atom in the Crystal Structure of the Zinc Finger of Zgpat (pdb code 4ii1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Zinc Finger of Zgpat, PDB code: 4ii1:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of the Zinc Finger of Zgpat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Zinc Finger of Zgpat within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:61.0 occ:1.00 NE2 A:HIS198 2.0 46.9 1.0 SG A:CYS194 2.3 45.6 1.0 SG A:CYS180 2.4 41.1 1.0 SG A:CYS188 2.4 49.0 1.0 CD2 A:HIS198 3.0 46.9 1.0 CE1 A:HIS198 3.1 46.5 1.0 CB A:CYS194 3.1 42.5 1.0 CB A:CYS180 3.2 37.9 1.0 CB A:CYS188 3.5 46.3 1.0 CG A:HIS198 4.2 45.3 1.0 ND1 A:HIS198 4.2 47.0 1.0 CB A:PHE183 4.3 47.4 1.0 CA A:CYS194 4.6 43.5 1.0 CA A:CYS180 4.7 38.1 1.0 N A:PHE183 4.7 44.7 1.0 O A:PHE196 4.7 47.3 1.0 CB A:PHE190 4.8 50.9 1.0 CA A:CYS188 4.9 47.4 1.0 UNK A:UNX902 4.9 30.0 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of the Zinc Finger of Zgpat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Zinc Finger of Zgpat within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn901 b:79.0 occ:1.00 NE2 B:HIS198 2.1 53.2 1.0 SG B:CYS180 2.3 53.7 1.0 SG B:CYS194 2.3 64.7 1.0 SG B:CYS188 2.4 68.0 1.0 CE1 B:HIS198 3.1 52.9 1.0 CD2 B:HIS198 3.1 53.3 1.0 CB B:CYS180 3.2 49.8 1.0 CB B:CYS194 3.3 61.8 1.0 CB B:CYS188 3.4 64.7 1.0 CB B:PHE183 4.2 66.5 1.0 UNK B:UNX904 4.2 30.0 1.0 CG B:HIS198 4.2 51.2 1.0 ND1 B:HIS198 4.3 53.3 1.0 N B:PHE183 4.6 62.3 1.0 CA B:CYS180 4.6 49.5 1.0 CA B:CYS194 4.7 63.0 1.0 O B:PHE196 4.8 55.0 1.0 CA B:CYS188 4.8 65.9 1.0 CA B:PHE183 4.9 63.8 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of the Zinc Finger of Zgpat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Zinc Finger of Zgpat within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn901 b:74.5 occ:1.00 NE2 C:HIS198 2.1 54.9 1.0 SG C:CYS194 2.3 62.5 1.0 SG C:CYS180 2.3 50.4 1.0 SG C:CYS188 2.4 62.3 1.0 CE1 C:HIS198 3.1 54.4 1.0 CD2 C:HIS198 3.1 55.1 1.0 CB C:CYS194 3.2 59.6 1.0 CB C:CYS180 3.3 46.6 1.0 CB C:CYS188 3.4 59.6 1.0 UNK C:UNX902 4.2 30.0 1.0 CG C:HIS198 4.2 53.6 1.0 ND1 C:HIS198 4.2 55.0 1.0 CB C:PHE183 4.3 59.1 1.0 CA C:CYS194 4.6 61.2 1.0 N C:PHE183 4.6 57.0 1.0 CA C:CYS180 4.7 46.5 1.0 CA C:CYS188 4.8 61.3 1.0 O C:PHE196 5.0 58.7 1.0 CA C:PHE183 5.0 57.3 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of the Zinc Finger of Zgpat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Zinc Finger of Zgpat within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn901 b:76.9 occ:1.00 NE2 D:HIS198 2.2 57.8 1.0 SG D:CYS194 2.3 69.2 1.0 SG D:CYS180 2.3 54.1 1.0 SG D:CYS188 2.4 73.9 1.0 CE1 D:HIS198 3.1 57.4 1.0 CD2 D:HIS198 3.2 57.6 1.0 CB D:CYS194 3.2 66.2 1.0 CB D:CYS180 3.3 51.0 1.0 CB D:CYS188 3.4 71.0 1.0 CB D:PHE183 4.3 62.2 1.0 ND1 D:HIS198 4.3 57.4 1.0 CG D:HIS198 4.3 54.8 1.0 UNK D:UNX902 4.6 30.0 1.0 CA D:CYS194 4.6 67.7 1.0 N D:PHE183 4.7 59.6 1.0 CA D:CYS180 4.7 51.5 1.0 CA D:CYS188 4.8 72.2 1.0 CA D:PHE183 5.0 60.1 1.0

C.Bian, W.Tempel, A.Dong, X.Chao, M.Fu, A.K.Wernimont, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min. Crystal Structure of the Zinc Finger of Zgpat To Be Published.