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Zinc in PDB 3s2q: The Crystal Structure of AT5G51720 (at-Neet)

Protein crystallography data

The structure of The Crystal Structure of AT5G51720 (at-Neet), PDB code: 3s2q was solved by O.Livnah, Y.Eisenberg-Domovich, R.Nechushtai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.55 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.548, 60.090, 66.383, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.7

Other elements in 3s2q:

The structure of The Crystal Structure of AT5G51720 (at-Neet) also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of AT5G51720 (at-Neet) (pdb code 3s2q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of AT5G51720 (at-Neet), PDB code: 3s2q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3s2q

Go back to Zinc Binding Sites List in 3s2q
Zinc binding site 1 out of 2 in the The Crystal Structure of AT5G51720 (at-Neet)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of AT5G51720 (at-Neet) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:27.8
occ:1.00
NE2 A:HIS89 2.0 25.6 1.0
NZ B:LYS56 2.0 24.0 1.0
O A:HOH11 2.3 17.5 1.0
O B:HOH149 2.9 69.5 1.0
CE1 A:HIS89 3.0 25.1 1.0
CD2 A:HIS89 3.1 25.7 1.0
CE B:LYS56 3.2 24.6 1.0
CD B:LYS56 3.4 24.0 1.0
CG2 A:VAL90 3.9 25.8 1.0
ND1 A:HIS89 4.1 24.5 1.0
CG A:HIS89 4.2 24.3 1.0
CD A:PRO102 4.5 23.2 1.0
CG B:LYS56 4.9 24.2 1.0
CG A:PRO102 4.9 22.3 1.0

Zinc binding site 2 out of 2 in 3s2q

Go back to Zinc Binding Sites List in 3s2q
Zinc binding site 2 out of 2 in the The Crystal Structure of AT5G51720 (at-Neet)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of AT5G51720 (at-Neet) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:28.8
occ:1.00
NE2 B:HIS89 2.1 25.8 1.0
NZ A:LYS56 2.1 32.3 1.0
O B:HOH139 2.2 28.2 1.0
O B:HOH153 2.2 28.4 1.0
CE1 B:HIS89 3.0 24.6 1.0
CE A:LYS56 3.0 33.4 1.0
CD2 B:HIS89 3.2 24.3 1.0
CD A:LYS56 3.5 32.2 1.0
CG2 B:VAL90 4.0 25.9 1.0
ND1 B:HIS89 4.1 22.3 1.0
CG B:HIS89 4.3 23.9 1.0
CD B:PRO102 4.6 22.1 1.0
CG A:LYS56 4.9 29.4 1.0
CG B:PRO102 5.0 21.0 1.0

Reference:

R.Nechushtai, A.R.Conlan, L.Song, Y.Harir, O.Yogev, Y.Eisenberg-Domovich, O.Livnah, D.Michaeli, R.Rosen, V.Ma, L.Yuting, J.A.Zuris, V.Shulaev, M.L.Paddock, Z.Y.Cabantchik, P.A.Jennings, R.Mittler. Arabidopsis Thaliana Chloroneet, A Member of the New Neet Family of Human Proteins, Is Involved in Development, Senescence and Iron Metabolism. To Be Published.
Page generated: Wed Dec 16 04:49:20 2020

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