Atomistry » Zinc » PDB 3qla-3qym » 3qm3
Atomistry »
  Zinc »
    PDB 3qla-3qym »
      3qm3 »

Zinc in PDB 3qm3: 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni

Enzymatic activity of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni

All present enzymatic activity of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni:
4.1.2.13;

Protein crystallography data

The structure of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni, PDB code: 3qm3 was solved by G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.66 / 1.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 76.996, 101.971, 105.662, 113.27, 95.34, 95.75
R / Rfree (%) 14.9 / 19.1

Other elements in 3qm3:

The structure of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni (pdb code 3qm3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni, PDB code: 3qm3:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 1 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn355

b:16.3
occ:1.00
NE2 A:HIS221 2.0 16.2 1.0
NE2 A:HIS105 2.1 15.4 1.0
OE1 A:GLU169 2.2 11.9 1.0
O A:HOH362 2.2 8.0 1.0
ND1 A:HIS260 2.2 14.2 1.0
OE2 A:GLU169 2.2 13.2 1.0
CD A:GLU169 2.5 12.4 1.0
CE1 A:HIS221 2.9 14.6 1.0
CE1 A:HIS260 3.0 14.5 1.0
CD2 A:HIS105 3.0 13.8 1.0
CD2 A:HIS221 3.1 18.5 1.0
CE1 A:HIS105 3.1 18.1 1.0
CG A:HIS260 3.4 12.8 1.0
CB A:HIS260 3.8 11.1 1.0
O A:HOH1313 4.0 22.5 1.0
CG A:GLU169 4.0 13.1 1.0
ND1 A:HIS221 4.1 17.1 1.0
NE2 A:HIS260 4.2 12.9 1.0
CG A:HIS105 4.2 15.0 1.0
CG A:HIS221 4.2 20.3 1.0
ND1 A:HIS105 4.2 15.6 1.0
O A:HOH396 4.2 13.4 1.0
O A:HOH1124 4.2 19.9 1.0
OD2 A:ASP139 4.3 12.9 1.0
CD2 A:HIS260 4.4 13.0 1.0
O A:HOH1899 4.6 28.2 1.0
CG A:ASP139 4.7 12.7 1.0
CE A:MET137 4.8 15.3 1.0
CB A:GLU169 4.8 12.7 1.0

Zinc binding site 2 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 2 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn355

b:24.2
occ:1.00
NE2 B:HIS221 2.0 22.8 1.0
OE1 B:GLU169 2.1 20.1 1.0
NE2 B:HIS105 2.1 19.1 1.0
O B:HOH2086 2.3 13.3 1.0
ND1 B:HIS260 2.3 17.9 1.0
OE2 B:GLU169 2.4 20.0 1.0
CD B:GLU169 2.5 21.8 1.0
CE1 B:HIS221 2.9 25.3 1.0
CD2 B:HIS105 3.0 20.5 1.0
CD2 B:HIS221 3.1 27.9 1.0
CE1 B:HIS105 3.1 21.2 1.0
CE1 B:HIS260 3.1 20.6 1.0
CG B:HIS260 3.4 18.1 1.0
CB B:HIS260 3.8 19.0 1.0
O B:HOH1990 4.0 17.7 1.0
ND1 B:HIS221 4.0 27.0 1.0
CG B:GLU169 4.1 22.0 1.0
CG B:HIS221 4.2 31.5 1.0
OD2 B:ASP139 4.2 22.7 1.0
CG B:HIS105 4.2 21.0 1.0
O B:HOH2379 4.2 22.2 1.0
ND1 B:HIS105 4.2 21.2 1.0
O B:HOH1486 4.3 14.7 1.0
NE2 B:HIS260 4.3 16.7 1.0
CD2 B:HIS260 4.5 19.2 1.0
O B:HOH2110 4.7 27.1 1.0
CG B:ASP139 4.7 20.5 1.0
CB B:GLU169 4.9 21.3 1.0
CE B:MET137 4.9 25.7 1.0

Zinc binding site 3 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 3 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn355

b:18.5
occ:1.00
OE1 C:GLU169 2.1 12.8 1.0
NE2 C:HIS105 2.1 18.1 1.0
NE2 C:HIS221 2.1 21.5 1.0
O C:HOH371 2.2 6.7 1.0
ND1 C:HIS260 2.2 13.6 1.0
OE2 C:GLU169 2.3 16.9 1.0
CD C:GLU169 2.5 14.2 1.0
CE1 C:HIS221 3.0 22.3 1.0
CD2 C:HIS105 3.0 14.3 1.0
CE1 C:HIS260 3.0 15.3 1.0
CE1 C:HIS105 3.1 24.0 1.0
CD2 C:HIS221 3.2 24.7 1.0
CG C:HIS260 3.4 14.8 1.0
CB C:HIS260 3.8 13.4 1.0
O C:HOH1338 4.0 27.9 1.0
CG C:GLU169 4.0 15.3 1.0
O C:HOH1693 4.1 18.1 1.0
ND1 C:HIS221 4.1 23.4 1.0
CG C:HIS105 4.2 17.1 1.0
O C:HOH373 4.2 13.2 1.0
ND1 C:HIS105 4.2 19.5 1.0
NE2 C:HIS260 4.2 11.5 1.0
CG C:HIS221 4.3 25.1 1.0
OD2 C:ASP139 4.3 14.9 1.0
CD2 C:HIS260 4.4 11.0 1.0
O C:HOH1539 4.5 18.6 1.0
CG C:ASP139 4.7 14.1 1.0
CB C:GLU169 4.8 12.9 1.0
CE C:MET137 4.9 17.9 1.0

Zinc binding site 4 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 4 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn355

b:23.9
occ:1.00
NE2 D:HIS221 2.1 17.3 1.0
NE2 D:HIS105 2.1 23.2 1.0
ND1 D:HIS260 2.2 19.6 1.0
OE1 D:GLU169 2.2 20.2 1.0
OE2 D:GLU169 2.3 16.4 1.0
O D:HOH375 2.3 12.0 1.0
CD D:GLU169 2.6 20.8 1.0
CE1 D:HIS260 3.0 18.4 1.0
CD2 D:HIS221 3.1 23.9 1.0
CE1 D:HIS221 3.1 21.1 1.0
CD2 D:HIS105 3.1 22.9 1.0
CE1 D:HIS105 3.1 24.8 1.0
CG D:HIS260 3.3 16.6 1.0
CB D:HIS260 3.8 19.0 1.0
O D:HOH1989 4.0 23.7 1.0
CG D:GLU169 4.1 19.1 1.0
O D:HOH3140 4.1 26.5 1.0
ND1 D:HIS221 4.2 26.6 1.0
O D:HOH969 4.2 10.6 1.0
NE2 D:HIS260 4.2 16.2 1.0
CG D:HIS221 4.2 26.9 1.0
ND1 D:HIS105 4.2 26.1 1.0
CG D:HIS105 4.2 21.7 1.0
OD2 D:ASP139 4.3 21.3 1.0
CD2 D:HIS260 4.4 15.2 1.0
O D:HOH2327 4.4 30.2 1.0
CG D:ASP139 4.7 20.2 1.0
CB D:GLU169 4.8 18.2 1.0
CE D:MET137 4.9 26.0 1.0

Zinc binding site 5 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 5 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn355

b:16.6
occ:1.00
NE2 E:HIS105 2.1 13.2 1.0
OE1 E:GLU169 2.1 10.7 1.0
NE2 E:HIS221 2.1 19.1 1.0
O E:HOH367 2.2 8.3 1.0
OE2 E:GLU169 2.2 16.7 1.0
ND1 E:HIS260 2.2 14.6 1.0
CD E:GLU169 2.4 14.7 1.0
CD2 E:HIS105 3.0 15.4 1.0
CE1 E:HIS260 3.0 16.3 1.0
CE1 E:HIS221 3.1 16.8 1.0
CE1 E:HIS105 3.1 20.1 1.0
CD2 E:HIS221 3.1 22.2 1.0
CG E:HIS260 3.4 14.8 1.0
CB E:HIS260 3.8 14.1 1.0
CG E:GLU169 3.9 15.5 1.0
O E:HOH1250 4.1 25.1 1.0
O E:HOH941 4.1 20.6 1.0
O E:HOH372 4.1 12.1 1.0
ND1 E:HIS105 4.2 20.1 1.0
CG E:HIS105 4.2 17.0 1.0
ND1 E:HIS221 4.2 15.0 1.0
NE2 E:HIS260 4.2 13.2 1.0
OD2 E:ASP139 4.3 14.4 1.0
CG E:HIS221 4.3 23.1 1.0
CD2 E:HIS260 4.4 13.3 1.0
O E:HOH1410 4.4 23.1 1.0
CG E:ASP139 4.7 15.1 1.0
CB E:GLU169 4.8 13.2 1.0
CE E:MET137 4.9 13.7 1.0

Zinc binding site 6 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 6 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn355

b:28.6
occ:1.00
NE2 F:HIS105 2.1 24.1 1.0
NE2 F:HIS221 2.1 22.3 1.0
OE1 F:GLU169 2.2 26.6 1.0
O F:HOH2367 2.2 10.6 1.0
ND1 F:HIS260 2.3 20.4 1.0
OE2 F:GLU169 2.4 24.8 1.0
CD F:GLU169 2.6 23.3 1.0
CE1 F:HIS260 3.0 21.5 1.0
CD2 F:HIS105 3.0 26.3 1.0
CE1 F:HIS105 3.1 25.6 1.0
CD2 F:HIS221 3.1 28.8 1.0
CE1 F:HIS221 3.2 30.6 1.0
CG F:HIS260 3.4 21.9 1.0
CB F:HIS260 3.9 22.1 1.0
CG F:GLU169 4.1 25.6 1.0
O F:HOH2723 4.1 30.1 1.0
O F:HOH887 4.1 11.0 1.0
ND1 F:HIS105 4.2 29.4 1.0
CG F:HIS105 4.2 24.4 1.0
OD2 F:ASP139 4.2 27.0 1.0
NE2 F:HIS260 4.2 16.1 1.0
ND1 F:HIS221 4.2 30.5 1.0
CG F:HIS221 4.3 32.9 1.0
CD2 F:HIS260 4.4 19.8 1.0
CG F:ASP139 4.7 27.1 1.0
CB F:GLU169 4.8 24.7 1.0
CE F:MET137 4.9 32.0 1.0

Zinc binding site 7 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 7 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn355

b:17.8
occ:1.00
NE2 G:HIS221 2.0 15.9 1.0
NE2 G:HIS105 2.1 10.2 1.0
OE1 G:GLU169 2.2 14.8 1.0
ND1 G:HIS260 2.2 15.4 1.0
O G:HOH379 2.2 8.9 1.0
OE2 G:GLU169 2.3 13.7 1.0
CD G:GLU169 2.6 16.7 1.0
CE1 G:HIS221 2.9 15.6 1.0
CE1 G:HIS260 3.0 13.1 1.0
CD2 G:HIS105 3.0 13.0 1.0
CD2 G:HIS221 3.1 19.9 1.0
CE1 G:HIS105 3.1 16.2 1.0
CG G:HIS260 3.4 12.7 1.0
CB G:HIS260 3.9 13.7 1.0
CG G:GLU169 4.1 14.7 1.0
ND1 G:HIS221 4.1 18.7 1.0
O G:HOH377 4.2 13.1 1.0
O G:HOH1158 4.2 22.2 1.0
NE2 G:HIS260 4.2 10.6 1.0
CG G:HIS221 4.2 19.4 1.0
O G:HOH763 4.2 21.4 1.0
CG G:HIS105 4.2 13.1 1.0
ND1 G:HIS105 4.2 13.2 1.0
OD2 G:ASP139 4.3 13.1 1.0
CD2 G:HIS260 4.4 8.0 1.0
O G:HOH1404 4.6 24.6 1.0
CG G:ASP139 4.8 14.9 1.0
CB G:GLU169 4.8 12.7 1.0

Zinc binding site 8 out of 8 in 3qm3

Go back to Zinc Binding Sites List in 3qm3
Zinc binding site 8 out of 8 in the 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn355

b:27.7
occ:1.00
NE2 H:HIS221 2.0 26.8 1.0
OE1 H:GLU169 2.1 23.5 1.0
NE2 H:HIS105 2.1 21.9 1.0
ND1 H:HIS260 2.2 19.3 1.0
O H:HOH504 2.3 9.4 1.0
OE2 H:GLU169 2.4 21.7 1.0
CD H:GLU169 2.5 21.5 1.0
CE1 H:HIS221 3.0 25.8 1.0
CE1 H:HIS260 3.0 22.9 1.0
CD2 H:HIS105 3.1 24.1 1.0
CD2 H:HIS221 3.1 30.3 1.0
CE1 H:HIS105 3.1 29.0 1.0
CG H:HIS260 3.3 20.6 1.0
CB H:HIS260 3.8 21.9 1.0
O H:HOH1731 4.0 16.3 1.0
CG H:GLU169 4.1 22.9 1.0
ND1 H:HIS221 4.1 27.7 1.0
O H:HOH3109 4.1 20.6 1.0
O H:HOH1041 4.2 17.9 1.0
CG H:HIS221 4.2 33.8 1.0
NE2 H:HIS260 4.2 18.3 1.0
ND1 H:HIS105 4.2 26.0 1.0
CG H:HIS105 4.2 21.1 1.0
OD2 H:ASP139 4.3 25.5 1.0
CD2 H:HIS260 4.4 17.8 1.0
CG H:ASP139 4.7 24.0 1.0
O H:HOH1580 4.8 22.5 1.0
CB H:GLU169 4.8 23.5 1.0
CE H:MET137 5.0 23.8 1.0

Reference:

G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.85 Angstrom Resolution Crystal Structure of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni To Be Published.
Page generated: Wed Dec 16 04:45:31 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy