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Zinc in the structure of Recognition of The Amber Stop Codon By Release Factor RF1. This Entry 3MS0 Contains 30S Ribosomal Subunit. The 50S Ribosomal Subunit Can Be Found In Pdb Entry 3MRZ. Molecule A in the Same Asymmetric Unit Is Deposited As 3MR8 (30S) and 3MS1 (50S). (pdb 3ms0)

The binding sites of Zinc atom in the structure of Recognition of The Amber Stop Codon By Release Factor RF1. This Entry 3MS0 Contains 30S Ribosomal Subunit. The 50S Ribosomal Subunit Can Be Found In Pdb Entry 3MRZ. Molecule A in the Same Asymmetric Unit Is Deposited As 3MR8 (30S) and 3MS1 (50S). (pdb code 3ms0). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 3ms0 structure was solved by A.KOROSTELEV, J.ZHU, H.ASAHARA, H.F.NOLLER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-3.6
Space groupP212121
a (A)210.380
b (A)452.700
c (A)617.090
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)26
Rfree (%)29.1

Zinc Binding Sites:

Zinc binding site 1 out of 2 in 3ms0


Zinc binding site 1 out of 2 in 3ms0
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stereopicture of Zinc binding site 1 out of 2 in 3ms0
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 3ms0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1202, N: Cys24, N: Arg26, N: Cys27, N: Gly28, N: Arg29, N: Cys40, N: Cys43,

conact list:


AtomAtomDistance (A)
ZnO2' A:G12024.48
ZnCB N:Cys243.32
ZnSG N:Cys242.74
ZnCA N:Cys244.75
ZnC N:Arg264.83
ZnO N:Cys273.91
ZnN N:Cys273.67
ZnCB N:Cys273.38
ZnSG N:Cys272.60
ZnC N:Cys273.41
ZnCA N:Cys273.63
ZnO N:Gly284.87
ZnN N:Gly283.41
ZnC N:Gly283.89
ZnCA N:Gly284.13
ZnN N:Arg293.03
ZnCB N:Arg293.05
ZnCD N:Arg294.60
ZnC N:Arg294.89
ZnCG N:Arg294.38
ZnCA N:Arg293.60
ZnN N:Cys404.15
ZnCB N:Cys403.06
ZnSG N:Cys402.87
ZnCA N:Cys404.22
ZnCB N:Cys434.71
ZnSG N:Cys433.83

interactive model:


Zinc binding site 2 out of 2 in 3ms0


Zinc binding site 2 out of 2 in 3ms0
Click to enlarge
stereopicture of Zinc binding site 2 out of 2 in 3ms0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 3ms0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Cys9, D: Cys12, D: Leu19, D: Leu21, D: Lys22, D: Cys26, D: Cys31, D: Ala32,

conact list:


AtomAtomDistance (A)
ZnO D:Cys94.81
ZnN D:Cys94.79
ZnCB D:Cys93.52
ZnSG D:Cys92.61
ZnC D:Cys94.85
ZnCA D:Cys93.83
ZnCB D:Cys124.61
ZnSG D:Cys123.31
ZnO D:Leu193.39
ZnC D:Leu194.61
ZnCD1 D:Leu213.31
ZnCG D:Leu214.57
ZnCG D:Lys224.87
ZnCB D:Cys263.87
ZnSG D:Cys262.57
ZnCA D:Cys264.44
ZnO D:Cys312.29
ZnN D:Cys314.71
ZnCB D:Cys313.55
ZnSG D:Cys312.82
ZnC D:Cys313.06
ZnCA D:Cys313.28
ZnN D:Ala324.30
ZnCB D:Ala324.68

interactive model:




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