Zinc in PDB 3dgl: 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation

The structure of 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation, PDB code: 3dgl was solved by C.R.Simmons, J.P.Allen, J.C.Chaput, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.702, 73.702, 54.760, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 20

The binding sites of Zinc atom in the 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation (pdb code 3dgl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation, PDB code: 3dgl:

Zinc binding site 1 out of 1 in the 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.8 A Crystal Structure of A Non-Biological Protein with Bound Atp in A Novel Bent Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn80 b:16.4 occ:1.00 SG A:CYS49 2.3 14.8 1.0 SG A:CYS26 2.4 16.1 1.0 SG A:CYS46 2.4 14.6 1.0 SG A:CYS23 2.4 14.1 1.0 CB A:CYS23 3.1 12.9 1.0 CB A:CYS49 3.1 13.6 1.0 CB A:CYS26 3.2 17.0 1.0 CB A:CYS46 3.5 13.2 1.0 N A:CYS26 3.6 16.3 1.0 CA A:CYS26 4.0 17.0 1.0 N A:CYS46 4.0 13.2 1.0 N A:CYS49 4.2 13.4 1.0 CA A:CYS49 4.3 13.3 1.0 CA A:CYS46 4.3 13.0 1.0 O A:HOH183 4.4 30.8 1.0 CB A:ALA29 4.4 15.5 1.0 O A:HOH184 4.6 38.0 1.0 CA A:CYS23 4.6 13.5 1.0 O A:HOH190 4.7 46.2 1.0 CB A:LYS25 4.7 13.5 1.0 C A:LYS25 4.7 15.5 1.0 O A:CYS46 4.9 11.2 1.0 C A:CYS26 4.9 17.6 1.0 C A:CYS46 4.9 12.9 1.0 N A:LYS27 4.9 18.0 1.0

C.R.Simmons, J.M.Stomel, M.D.Mcconnell, D.A.Smith, J.L.Watkins, J.P.Allen, J.C.Chaput. A Synthetic Protein Selected For Ligand Binding Affinity Mediates Atp Hydrolysis. Acs Chem.Biol. V. 4 649 2009.
ISSN: ISSN 1554-8929
PubMed: 19522480
DOI: 10.1021/CB900109W