Atomistry » Zinc » PDB 3ciz-3cyu » 3ciz
Atomistry »
  Zinc »
    PDB 3ciz-3cyu »
      3ciz »

Zinc in PDB 3ciz: Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments

Enzymatic activity of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments

All present enzymatic activity of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments, PDB code: 3ciz was solved by J.Hendle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.055, 106.454, 127.051, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.5

Other elements in 3ciz:

The structure of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments also contains other interesting chemical elements:

Bromine (Br) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments (pdb code 3ciz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments, PDB code: 3ciz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3ciz

Go back to Zinc Binding Sites List in 3ciz
Zinc binding site 1 out of 2 in the Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn571

b:36.1
occ:1.00
 NE2 A:HIS1 2.1 22.7 1.0
O A:HOH896 2.5 25.9 1.0
CE1 A:HIS1 2.8 21.5 1.0
CD2 A:HIS1 3.2 18.0 1.0
ND1 A:HIS1 3.9 22.5 1.0
CG A:HIS1 4.2 23.3 1.0
N A:HIS0 5.0 32.8 1.0

Zinc binding site 2 out of 2 in 3ciz

Go back to Zinc Binding Sites List in 3ciz
Zinc binding site 2 out of 2 in the Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Hepatitis C Virus Rna-Dependent Rna Polymerase NS5B in Complex with Small Molecule Fragments within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn571

b:29.9
occ:1.00
 NE2 B:HIS1 2.1 19.5 1.0
O B:HOH808 2.3 24.1 1.0
CE1 B:HIS1 2.9 21.0 1.0
CD2 B:HIS1 3.1 19.4 1.0
ND1 B:HIS1 4.0 22.8 1.0
CG B:HIS1 4.1 18.8 1.0
N B:HIS0 4.7 28.1 1.0
O B:HIS0 5.0 26.3 1.0

Reference:

S.S.Antonysamy, B.Aubol, J.Blaney, M.F.Browner, A.M.Giannetti, S.F.Harris, N.Hebert, J.Hendle, S.Hopkins, E.Jefferson, C.Kissinger, V.Leveque, D.Marciano, E.Mcgee, I.Najera, B.Nolan, M.Tomimoto, E.Torres, T.Wright. Fragment-Based Discovery of Hepatitis C Virus NS5B Rna Polymerase Inhibitors. Bioorg.Med.Chem.Lett. V. 18 2990 2008.
ISSN: ISSN 0960-894X
PubMed: 18400495
DOI: 10.1016/J.BMCL.2008.03.056
Page generated: Thu Oct 24 11:49:46 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy