Zinc in PDB 2kem: Extended Structure of Citidine Deaminase Domain of APOBEC3G

The binding sites of Zinc atom in the Extended Structure of Citidine Deaminase Domain of APOBEC3G (pdb code 2kem). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Extended Structure of Citidine Deaminase Domain of APOBEC3G, PDB code: 2kem:

Zinc binding site 1 out of 1 in the Extended Structure of Citidine Deaminase Domain of APOBEC3G


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Extended Structure of Citidine Deaminase Domain of APOBEC3G within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn195 b:0.0 occ:1.00 OE2 A:GLU69 1.9 0.0 1.0 ND1 A:HIS67 2.3 0.0 1.0 SG A:CYS98 2.3 0.0 1.0 SG A:CYS101 2.3 0.0 1.0 CE1 A:HIS67 2.8 0.0 1.0 CD A:GLU69 2.9 0.0 1.0 CG A:HIS67 2.9 0.0 1.0 HB2 A:HIS67 3.0 100.0 1.0 O A:PRO97 3.1 0.0 1.0 HE1 A:HIS67 3.1 100.0 1.0 HB2 A:CYS101 3.3 100.0 1.0 HG3 A:GLU69 3.3 100.0 1.0 HB3 A:CYS98 3.3 100.0 1.0 C A:PRO97 3.4 0.0 1.0 CB A:CYS98 3.4 0.0 1.0 CB A:CYS101 3.5 0.0 1.0 H A:HIS67 3.5 100.0 1.0 CG A:GLU69 3.5 0.0 1.0 CB A:HIS67 3.5 0.0 1.0 HB2 A:PRO97 3.6 100.0 1.0 HG2 A:GLU69 3.6 100.0 1.0 NE2 A:HIS67 3.6 0.0 1.0 CD2 A:HIS67 3.7 0.0 1.0 HA A:PRO97 3.8 100.0 1.0 OE1 A:GLU69 3.9 0.0 1.0 N A:CYS98 3.9 0.0 1.0 HB3 A:CYS101 4.0 100.0 1.0 CA A:PRO97 4.0 0.0 1.0 N A:HIS67 4.2 0.0 1.0 CB A:PRO97 4.2 0.0 1.0 CA A:CYS98 4.3 0.0 1.0 H A:CYS101 4.3 100.0 1.0 HB2 A:CYS98 4.3 100.0 1.0 HB3 A:HIS67 4.3 100.0 1.0 HE2 A:MET105 4.4 100.0 1.0 HE2 A:HIS67 4.5 100.0 1.0 CA A:HIS67 4.5 0.0 1.0 HB3 A:PRO97 4.5 100.0 1.0 H A:CYS98 4.5 100.0 1.0 HD2 A:HIS67 4.6 100.0 1.0 HA A:ARG66 4.6 100.0 1.0 HD21 A:LEU70 4.6 43.7 1.0 HD12 A:LEU70 4.6 43.7 1.0 CA A:CYS101 4.7 0.0 1.0 HH21 A:ARG25 4.7 100.0 1.0 H A:LEU70 4.7 100.0 1.0 N A:CYS101 4.8 0.0 1.0 HB2 A:LEU70 4.8 100.0 1.0 HB3 A:ALA56 4.8 100.0 1.0 O A:CYS98 4.8 0.0 1.0 C A:CYS98 5.0 0.0 1.0 HA A:CYS101 5.0 100.0 1.0 CB A:GLU69 5.0 0.0 1.0

E.Harjes, P.J.Gross, K.M.Chen, Y.Lu, K.Shindo, R.Nowarski, J.D.Gross, M.Kotler, R.S.Harris, H.Matsuo. An Extended Structure of the APOBEC3G Catalytic Domain Suggests A Unique Holoenzyme Model J.Mol.Biol. V. 389 819 2009.
ISSN: ISSN 0022-2836
PubMed: 19389408
DOI: 10.1016/J.JMB.2009.04.031