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Zinc in PDB 2i9w: Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution, PDB code: 2i9w was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.50 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.490, 54.690, 83.880, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.8

Other elements in 2i9w:

The structure of Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution (pdb code 2i9w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution, PDB code: 2i9w:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2i9w

Go back to Zinc Binding Sites List in 2i9w
Zinc binding site 1 out of 2 in the Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:17.5
occ:1.00
SG A:CYS8 2.3 18.8 1.0
SG A:CYS28 2.3 20.0 1.0
SG A:CYS29 2.4 18.2 1.0
SG A:CYS10 2.4 20.6 1.0
CB A:CYS28 3.3 19.1 1.0
CB A:CYS29 3.3 18.8 1.0
CB A:CYS8 3.4 17.4 1.0
N A:CYS29 3.4 16.3 1.0
CB A:CYS10 3.5 17.9 1.0
OG A:SER61 3.9 21.9 1.0
CA A:CYS29 3.9 17.1 1.0
O A:HOH274 4.0 34.3 1.0
C A:CYS28 4.1 19.6 1.0
N A:CYS10 4.2 17.7 1.0
CA A:CYS28 4.3 20.0 1.0
CA A:CYS10 4.3 18.9 1.0
NH1 A:ARG57 4.4 26.0 0.5
CG A:GLN11 4.6 24.1 1.0
CA A:CYS8 4.6 19.1 1.0
NE2 A:GLN11 4.7 34.6 1.0
C A:CYS10 4.8 20.6 1.0
N A:GLN11 4.8 19.5 1.0
C A:CYS8 4.8 17.8 1.0
CB A:SER61 4.9 18.6 1.0

Zinc binding site 2 out of 2 in 2i9w

Go back to Zinc Binding Sites List in 2i9w
Zinc binding site 2 out of 2 in the Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Sec-C Motif Containing Protein (PSYC_2064) From Psychrobacter Arcticus at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:21.3
occ:1.00
SG A:CYS167 2.3 23.6 1.0
SG A:CYS169 2.4 22.3 1.0
SG A:CYS179 2.4 21.9 1.0
SG A:CYS178 2.4 22.5 1.0
CB A:CYS169 3.2 21.4 1.0
N A:CYS179 3.2 23.4 1.0
CB A:CYS167 3.2 23.8 1.0
CB A:CYS179 3.3 23.2 1.0
CB A:CYS178 3.4 19.7 1.0
CA A:CYS179 3.8 24.4 1.0
N A:CYS169 4.1 22.6 1.0
OG A:SER171 4.1 20.7 1.0
C A:CYS178 4.1 22.4 1.0
CA A:CYS169 4.2 24.3 1.0
NE2 A:HIS113 4.3 18.0 1.0
CA A:CYS178 4.3 21.7 1.0
CG2 A:VAL138 4.6 19.9 1.0
CB A:SER171 4.6 20.8 1.0
CA A:CYS167 4.6 19.8 1.0
CE1 A:HIS113 4.6 18.3 1.0
C A:CYS167 4.9 20.3 1.0
C A:CYS169 5.0 23.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Oct 17 00:53:23 2024

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