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Zinc in PDB 2hqh: Crystal Structure of P150GLUED and Clip-170

Protein crystallography data

The structure of Crystal Structure of P150GLUED and Clip-170, PDB code: 2hqh was solved by I.Hayashi, M.Ikura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.68 / 1.80
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.800, 122.800, 68.400, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 21.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of P150GLUED and Clip-170 (pdb code 2hqh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of P150GLUED and Clip-170, PDB code: 2hqh:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2hqh

Go back to Zinc Binding Sites List in 2hqh
Zinc binding site 1 out of 4 in the Crystal Structure of P150GLUED and Clip-170


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of P150GLUED and Clip-170 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1500

b:15.3
occ:1.00
NE2 E:HIS1416 2.1 11.6 1.0
SG E:CYS1411 2.3 17.3 1.0
SG E:CYS1408 2.4 14.2 1.0
SG E:CYS1421 2.4 17.5 1.0
CD2 E:HIS1416 3.1 11.9 1.0
CE1 E:HIS1416 3.1 16.6 1.0
CB E:CYS1421 3.2 17.3 1.0
CB E:CYS1408 3.3 14.3 1.0
CB E:CYS1411 3.3 15.9 1.0
N E:CYS1411 3.7 15.9 1.0
CA E:CYS1411 4.1 16.9 1.0
CA E:CYS1421 4.2 14.7 1.0
ND1 E:HIS1416 4.2 12.6 1.0
CG E:HIS1416 4.2 15.1 1.0
CB E:ILE1410 4.3 15.1 1.0
O E:HOH12 4.4 16.7 1.0
O A:HOH111 4.5 14.1 1.0
C E:ILE1410 4.7 16.6 1.0
CG2 B:ILE36 4.7 16.5 1.0
CA E:CYS1408 4.7 12.4 1.0
CG2 E:ILE1410 4.8 17.1 1.0
CA E:ILE1410 4.9 13.6 1.0

Zinc binding site 2 out of 4 in 2hqh

Go back to Zinc Binding Sites List in 2hqh
Zinc binding site 2 out of 4 in the Crystal Structure of P150GLUED and Clip-170


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of P150GLUED and Clip-170 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1501

b:14.8
occ:1.00
NE2 F:HIS1416 2.1 14.2 1.0
SG F:CYS1411 2.3 17.6 1.0
SG F:CYS1421 2.4 17.4 1.0
SG F:CYS1408 2.4 14.8 1.0
CE1 F:HIS1416 3.0 18.6 1.0
CD2 F:HIS1416 3.1 13.4 1.0
CB F:CYS1421 3.2 16.8 1.0
CB F:CYS1411 3.3 17.5 1.0
CB F:CYS1408 3.3 14.9 1.0
N F:CYS1411 3.7 13.3 1.0
CA F:CYS1411 4.1 14.8 1.0
CA F:CYS1421 4.1 16.9 1.0
ND1 F:HIS1416 4.2 12.6 1.0
CG F:HIS1416 4.3 13.6 1.0
CB F:ILE1410 4.3 17.6 1.0
O F:HOH4 4.4 13.2 1.0
O B:HOH109 4.4 18.0 1.0
C F:ILE1410 4.7 16.0 1.0
CG2 F:ILE1410 4.7 19.2 1.0
CA F:CYS1408 4.7 11.6 1.0
CA F:ILE1410 4.9 13.7 1.0

Zinc binding site 3 out of 4 in 2hqh

Go back to Zinc Binding Sites List in 2hqh
Zinc binding site 3 out of 4 in the Crystal Structure of P150GLUED and Clip-170


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of P150GLUED and Clip-170 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1502

b:15.2
occ:1.00
NE2 G:HIS1416 2.1 13.2 1.0
SG G:CYS1411 2.3 17.1 1.0
SG G:CYS1408 2.4 14.3 1.0
SG G:CYS1421 2.4 17.3 1.0
CE1 G:HIS1416 3.0 14.6 1.0
CD2 G:HIS1416 3.1 11.8 1.0
CB G:CYS1421 3.2 15.9 1.0
CB G:CYS1411 3.3 15.0 1.0
CB G:CYS1408 3.3 14.6 1.0
N G:CYS1411 3.7 12.8 1.0
CA G:CYS1421 4.1 15.2 1.0
CA G:CYS1411 4.1 12.0 1.0
ND1 G:HIS1416 4.2 11.7 1.0
CG G:HIS1416 4.2 15.8 1.0
CB G:ILE1410 4.3 11.2 1.0
O G:HOH10 4.3 12.5 1.0
O C:HOH113 4.5 15.6 1.0
C G:ILE1410 4.7 13.1 1.0
CA G:CYS1408 4.7 11.8 1.0
CG2 G:ILE1410 4.8 15.4 1.0
CA G:ILE1410 4.9 13.0 1.0

Zinc binding site 4 out of 4 in 2hqh

Go back to Zinc Binding Sites List in 2hqh
Zinc binding site 4 out of 4 in the Crystal Structure of P150GLUED and Clip-170


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of P150GLUED and Clip-170 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1503

b:15.5
occ:1.00
NE2 H:HIS1416 2.1 12.7 1.0
SG H:CYS1421 2.3 17.5 1.0
SG H:CYS1411 2.3 17.2 1.0
SG H:CYS1408 2.3 13.4 1.0
CE1 H:HIS1416 3.0 18.6 1.0
CB H:CYS1421 3.2 15.7 1.0
CD2 H:HIS1416 3.2 15.4 1.0
CB H:CYS1408 3.3 13.2 1.0
CB H:CYS1411 3.3 16.6 1.0
N H:CYS1411 3.7 16.4 1.0
CA H:CYS1411 4.1 13.3 1.0
CA H:CYS1421 4.1 13.7 1.0
ND1 H:HIS1416 4.2 14.9 1.0
CG H:HIS1416 4.3 16.5 1.0
O H:HOH3 4.3 13.4 1.0
CB H:ILE1410 4.3 11.2 1.0
O D:HOH114 4.6 17.2 1.0
C H:ILE1410 4.7 15.5 1.0
CG2 A:ILE36 4.7 13.8 1.0
CA H:CYS1408 4.7 11.7 1.0
CG2 H:ILE1410 4.8 14.7 1.0
CA H:ILE1410 4.9 12.1 1.0

Reference:

I.Hayashi, M.J.Plevin, M.Ikura. CLIP170 Autoinhibition Mimics Intermolecular Interactions with P150GLUED or EB1. Nat.Struct.Mol.Biol. V. 14 980 2007.
ISSN: ISSN 1545-9993
PubMed: 17828275
DOI: 10.1038/NSMB1299
Page generated: Wed Dec 16 03:30:25 2020

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