Zinc in PDB 1oht: Peptidoglycan Recognition Protein-Lb

The structure of Peptidoglycan Recognition Protein-Lb, PDB code: 1oht was solved by M.-S.Kim, M.Byun, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30 / 2.0
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	40.561, 40.561, 337.997, 90.00, 90.00, 120.00
R / Rfree (%)	21.6 / 24.3

The binding sites of Zinc atom in the Peptidoglycan Recognition Protein-Lb (pdb code 1oht). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Peptidoglycan Recognition Protein-Lb, PDB code: 1oht:

Zinc binding site 1 out of 1 in the Peptidoglycan Recognition Protein-Lb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Peptidoglycan Recognition Protein-Lb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1185 b:17.6 occ:1.00 ND1 A:HIS152 2.1 19.6 1.0 ND1 A:HIS42 2.2 14.1 1.0 SG A:CYS160 2.3 17.6 1.0 CG A:HIS152 3.0 18.3 1.0 CG A:HIS42 3.1 15.3 1.0 CE1 A:HIS152 3.1 17.0 1.0 CB A:CYS160 3.2 17.6 1.0 CE1 A:HIS42 3.2 12.9 1.0 CB A:HIS152 3.2 16.9 1.0 CB A:HIS42 3.3 11.5 1.0 CA A:HIS42 4.0 12.7 1.0 CD2 A:HIS152 4.1 17.3 1.0 NE2 A:HIS152 4.1 18.0 1.0 CD2 A:HIS42 4.2 10.5 1.0 NE2 A:HIS42 4.3 13.8 1.0 O A:HIS43 4.5 18.2 1.0 CA A:CYS160 4.6 18.1 1.0 O A:HIS100 4.7 20.5 1.0 N A:HIS43 4.7 14.0 1.0 CA A:HIS152 4.8 16.6 1.0 O A:ILE41 4.9 16.2 1.0 C A:HIS42 4.9 12.1 1.0 CE2 A:TYR78 5.0 13.7 1.0 C A:CYS160 5.0 17.4 1.0

M.-S.Kim, M.Byun, B.-H.Oh. Crystal Structure of Peptidoglycan Recognition Protein Lb From Drosophila Melanogaster Nat.Immunol. V. 4 787 2003.
ISSN: ISSN 1529-2908
PubMed: 12845326
DOI: 10.1038/NI952