Zinc in PDB 9vkw: Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A

All present enzymatic activity of Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A:
2.3.1.48;

The binding sites of Zinc atom in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A (pdb code 9vkw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A, PDB code: 9vkw:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:116.2 occ:1.00 SG A:CYS306 2.3 90.6 1.0 NE2 A:HIS319 2.4 92.3 1.0 SG A:CYS323 2.4 105.3 1.0 SG A:CYS303 2.5 91.0 1.0 CD2 A:HIS319 3.3 92.3 1.0 CB A:CYS323 3.3 105.3 1.0 CB A:CYS303 3.3 91.0 1.0 CE1 A:HIS319 3.4 92.3 1.0 CB A:CYS306 3.9 90.6 1.0 N A:CYS306 4.3 90.6 1.0 CG A:HIS319 4.5 92.3 1.0 ND1 A:HIS319 4.5 92.3 1.0 CA A:CYS306 4.7 90.6 1.0 CA A:CYS323 4.8 105.3 1.0 CA A:CYS303 4.8 91.0 1.0 CB A:PHE305 4.9 93.1 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn801 b:172.5 occ:1.00 NE2 B:HIS291 2.1 139.2 1.0 CD2 B:HIS291 2.3 139.2 1.0 SG B:CYS294 2.4 135.8 1.0 CB B:CYS269 2.5 154.8 1.0 SG B:CYS269 2.5 154.8 1.0 SG B:CYS266 2.5 151.6 1.0 N B:CYS269 3.2 154.8 1.0 CB B:CYS294 3.3 135.8 1.0 CE1 B:HIS291 3.3 139.2 1.0 CA B:CYS269 3.4 154.8 1.0 CG B:HIS291 3.6 139.2 1.0 CB B:CYS266 3.8 151.6 1.0 ND1 B:HIS291 4.1 139.2 1.0 C B:VAL268 4.2 136.7 1.0 C B:CYS269 4.3 154.8 1.0 CB B:VAL268 4.3 136.7 1.0 CA B:VAL268 4.6 136.7 1.0 N B:LEU270 4.7 151.3 1.0 CA B:CYS294 4.7 135.8 1.0 N B:VAL268 4.8 136.7 1.0 CB B:HIS291 4.8 139.2 1.0 CG1 B:VAL268 4.9 136.7 1.0 N B:HIS291 4.9 139.2 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn802 b:162.0 occ:1.00 ND1 B:HIS399 2.2 133.6 1.0 CE1 B:HIS399 2.3 133.6 1.0 SG B:CYS376 2.4 146.6 1.0 SG B:CYS402 2.4 132.3 1.0 CB B:CYS379 2.6 153.9 1.0 CB B:CYS376 3.1 146.6 1.0 N B:CYS379 3.4 153.9 1.0 CB B:CYS402 3.5 132.3 1.0 CA B:CYS379 3.6 153.9 1.0 CG B:HIS399 3.6 133.6 1.0 NE2 B:HIS399 3.6 133.6 1.0 SG B:CYS379 3.7 153.9 1.0 CD2 B:HIS399 4.2 133.6 1.0 N B:LYS380 4.3 153.3 1.0 C B:CYS379 4.4 153.9 1.0 CB B:HIS399 4.5 133.6 1.0 CG B:PRO324 4.6 124.3 1.0 N B:HIS399 4.6 133.6 1.0 CA B:CYS376 4.6 146.6 1.0 C B:ILE378 4.7 152.3 1.0 CA B:CYS402 4.9 132.3 1.0 CB B:ILE378 4.9 152.3 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of the NUA3 Complex Bound to Ace-Coenzyme A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn803 b:160.5 occ:1.00 SG B:CYS310 2.4 130.5 1.0 SG B:CYS283 2.4 138.0 1.0 SG B:CYS286 2.4 149.0 1.0 CB B:CYS307 2.6 136.3 1.0 SG B:CYS307 3.5 136.3 1.0 N B:CYS307 3.6 136.3 1.0 CB B:CYS283 3.6 138.0 1.0 CA B:CYS307 3.6 136.3 1.0 CB B:CYS310 3.8 130.5 1.0 N B:CYS286 3.9 149.0 1.0 CB B:CYS286 4.1 149.0 1.0 N B:CYS310 4.4 130.5 1.0 CD1 B:ILE288 4.4 144.6 1.0 C B:CYS307 4.4 136.3 1.0 CA B:CYS286 4.6 149.0 1.0 CG1 B:ILE288 4.7 144.6 1.0 CA B:CYS310 4.7 130.5 1.0 O B:CYS307 4.8 136.3 1.0 N B:GLY285 4.8 150.9 1.0 CA B:GLY285 4.8 150.9 1.0 C B:LEU306 4.9 136.0 1.0 C B:GLY285 4.9 150.9 1.0 CA B:CYS283 5.0 138.0 1.0

Y.R.Wang, H.Q.Zhang. Structure of the NUA3 Complex Bound to Acetyl-Coenzyme A To Be Published.