Zinc in PDB 9k8c: Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34

The binding sites of Zinc atom in the Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34 (pdb code 9k8c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34, PDB code: 9k8c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:95.5 occ:1.00 OD2 A:ASP162 2.0 59.4 1.0 OD1 B:ASP216 2.0 56.5 1.0 NE2 A:HIS166 2.1 30.3 1.0 OD2 B:ASP216 2.3 59.2 1.0 CG B:ASP216 2.5 56.4 1.0 NE2 B:HIS220 2.6 51.9 1.0 CE1 A:HIS166 2.8 38.8 1.0 CG A:ASP162 2.8 55.2 1.0 OD1 A:ASP162 2.9 58.6 1.0 CD2 A:HIS166 3.2 33.2 1.0 CD2 B:HIS220 3.3 52.7 1.0 CE1 B:HIS220 3.5 56.1 1.0 ND1 A:HIS166 3.9 39.6 1.0 CB B:ASP216 4.0 50.4 1.0 NH2 A:ARG209 4.0 54.0 1.0 NZ B:LYS219 4.1 55.9 1.0 CG A:HIS166 4.2 38.2 1.0 CB A:ASP162 4.3 47.1 1.0 CE B:LYS219 4.3 56.6 1.0 CG B:HIS220 4.4 55.1 1.0 ND1 B:HIS220 4.5 59.3 1.0 CA B:ASP216 4.8 50.6 1.0 O B:ASP216 4.8 50.6 1.0 CZ A:ARG209 4.8 60.8 1.0 O A:ASP162 4.9 53.9 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of C2 Symmetric Interface of Designed Zinc-Induced Tetrahedron Cage-T32-ZN1-Hehe-34 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:102.1 occ:1.00 OD1 A:ASP216 2.0 56.2 1.0 OD2 B:ASP162 2.0 59.0 1.0 NE2 B:HIS166 2.1 37.9 1.0 NE2 A:HIS220 2.1 61.1 1.0 CD2 A:HIS220 2.7 60.3 1.0 CG A:ASP216 3.0 54.7 1.0 CD2 B:HIS166 3.1 36.9 1.0 CE1 B:HIS166 3.1 43.6 1.0 CG B:ASP162 3.1 54.1 1.0 CE1 A:HIS220 3.3 57.5 1.0 OD2 A:ASP216 3.4 54.7 1.0 OD1 B:ASP162 3.6 58.9 1.0 NZ A:LYS219 3.6 53.8 1.0 CG A:HIS220 3.9 60.2 1.0 CE A:LYS219 4.1 56.3 1.0 ND1 A:HIS220 4.2 63.0 1.0 ND1 B:HIS166 4.2 45.3 1.0 CG B:HIS166 4.2 41.1 1.0 CB A:ASP216 4.3 51.7 1.0 CB B:ASP162 4.4 45.8 1.0 O A:ASP216 4.6 53.8 1.0 NH2 B:ARG209 4.8 58.6 1.0 CA A:ASP216 5.0 50.9 1.0

Y.N.Qu, L.X.Cao. De Novo Design of Metal Ion Regulated Protein Assemblies To Be Published.