Zinc in PDB 8yle: Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp

All present enzymatic activity of Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp:
3.6.4.12;

The structure of Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp, PDB code: 8yle was solved by Y.Yang, L.Fu, X.Sun, H.Cheng, R.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.05 / 1.86
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.663, 89.561, 54.359, 90, 102.88, 90
R / Rfree (%)	18.3 / 21.4

The binding sites of Zinc atom in the Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp (pdb code 8yle). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp, PDB code: 8yle:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn504 b:16.5 occ:1.00 SG A:CYS391 2.3 16.6 1.0 SG A:CYS418 2.3 17.9 1.0 SG A:CYS422 2.3 17.8 1.0 SG A:CYS419 2.4 16.4 1.0 CB A:CYS391 3.3 16.5 1.0 CB A:CYS422 3.3 20.3 1.0 CB A:CYS418 3.3 17.7 1.0 CB A:CYS419 3.5 13.2 1.0 CA A:CYS391 3.6 15.5 1.0 N A:CYS419 3.8 17.3 1.0 N A:ARG392 4.0 16.9 1.0 C A:CYS418 4.1 19.3 1.0 C A:CYS391 4.2 16.4 1.0 CA A:CYS419 4.2 13.8 1.0 N A:CYS422 4.3 17.3 1.0 N A:GLY414 4.3 27.6 1.0 N A:ARG393 4.4 15.7 1.0 CA A:CYS422 4.4 18.6 1.0 CA A:CYS418 4.4 16.5 1.0 CB A:ARG393 4.5 18.9 1.0 O A:CYS418 4.8 16.0 1.0 CG A:MET413 4.8 31.1 1.0 C A:CYS419 4.9 16.5 1.0 N A:CYS391 4.9 17.7 1.0 CA A:MET413 4.9 31.9 1.0 O A:CYS419 4.9 15.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn505 b:18.2 occ:1.00 OE2 A:GLU46 2.0 20.3 1.0 NE2 A:HIS41 2.2 20.5 1.0 CD A:GLU46 3.0 23.4 1.0 CD2 A:HIS41 3.1 17.1 1.0 CE1 A:HIS41 3.2 21.8 1.0 CG A:GLU46 3.3 20.1 1.0 OE1 A:GLU46 4.1 25.8 1.0 CG A:PRO13 4.3 20.6 1.0 ND1 A:HIS41 4.3 15.6 1.0 CG A:HIS41 4.3 14.7 1.0 CD A:PRO13 4.4 23.2 1.0 CB A:GLU46 4.7 21.1 1.0 CB A:GLU45 5.0 18.7 1.0

R.Chen, Y.Yang, L.Fu, X.Sun, H.Cheng, R.Chen. N/A N/A.