Zinc in PDB 8rwz: Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL

The structure of Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL (pdb code 8rwz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL, PDB code: 8rwz:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn301 b:79.4 occ:1.00 ND1 R:HIS82 1.8 90.6 1.0 SG R:CYS56 1.8 89.0 1.0 CE1 R:HIS82 2.8 90.6 1.0 SG R:CYS53 2.9 91.5 1.0 CG R:HIS82 3.0 90.6 1.0 HE1 R:HIS82 3.0 90.6 1.0 HB2 R:HIS82 3.2 90.6 1.0 HB2 R:CYS68 3.2 84.0 1.0 CB R:CYS56 3.4 89.0 1.0 CB R:HIS82 3.5 90.6 1.0 HB2 R:CYS56 3.6 89.0 1.0 HB3 R:HIS82 3.7 90.6 1.0 SG R:CYS68 3.7 84.0 1.0 CB R:CYS68 3.9 84.0 1.0 NE2 R:HIS82 3.9 90.6 1.0 HA R:SER65 4.0 67.0 1.0 HB3 R:CYS56 4.0 89.0 1.0 CD2 R:HIS82 4.0 90.6 1.0 H R:CYS56 4.2 89.0 1.0 HB2 R:GLU55 4.4 87.0 1.0 HB3 R:CYS68 4.4 84.0 1.0 CA R:CYS56 4.5 89.0 1.0 N R:CYS56 4.5 89.0 1.0 HA R:CYS56 4.5 89.0 1.0 CB R:CYS53 4.6 91.5 1.0 HB R:THR64 4.8 71.2 1.0 O R:THR64 4.8 71.2 1.0 HE2 R:HIS82 4.8 90.6 1.0 H R:HIS82 4.9 90.6 1.0 HB2 R:CYS53 4.9 91.5 1.0 CA R:HIS82 5.0 90.6 1.0

Zinc binding site 2 out of 3 in the Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn302 b:72.1 occ:1.00 ND1 R:HIS80 1.8 91.2 1.0 SG R:CYS45 2.1 92.4 1.0 SG R:CYS83 2.3 92.6 1.0 CE1 R:HIS80 2.7 91.2 1.0 HE1 R:HIS80 3.0 91.2 1.0 CG R:HIS80 3.0 91.2 1.0 SG R:CYS42 3.0 91.3 1.0 HB2 R:HIS80 3.1 91.2 1.0 HG R:CYS45 3.2 92.4 1.0 HB3 R:CYS42 3.2 91.3 1.0 HG R:CYS83 3.3 92.6 1.0 CB R:CYS83 3.3 92.6 1.0 HB2 R:CYS83 3.4 92.6 1.0 HB3 R:CYS53 3.5 91.5 1.0 HB3 R:CYS45 3.5 92.4 1.0 HA R:CYS53 3.5 91.5 1.0 HB3 R:CYS83 3.5 92.6 1.0 CB R:CYS45 3.5 92.4 1.0 CB R:HIS80 3.6 91.2 1.0 CB R:CYS42 3.7 91.3 1.0 NE2 R:HIS80 3.9 91.2 1.0 H R:HIS80 3.9 91.2 1.0 CD2 R:HIS80 4.0 91.2 1.0 HB2 R:CYS53 4.0 91.5 1.0 H R:CYS45 4.1 92.4 1.0 HB2 R:CYS45 4.1 92.4 1.0 CB R:CYS53 4.2 91.5 1.0 HB2 R:CYS42 4.2 91.3 1.0 HB R:ILE44 4.2 91.8 1.0 HB3 R:HIS80 4.2 91.2 1.0 HG R:CYS42 4.2 91.3 1.0 CA R:CYS53 4.3 91.5 1.0 H R:ILE54 4.4 89.7 1.0 N R:CYS45 4.5 92.4 1.0 O R:CYS42 4.6 91.3 1.0 CA R:CYS45 4.6 92.4 1.0 H R:ASN47 4.7 90.1 1.0 N R:HIS80 4.7 91.2 1.0 HG13 R:ILE54 4.7 89.7 1.0 CA R:CYS83 4.8 92.6 1.0 HE2 R:HIS80 4.8 91.2 1.0 CA R:HIS80 4.8 91.2 1.0 H R:CYS83 4.8 92.6 1.0 HB3 R:ASN47 4.8 90.1 1.0 HG22 R:ILE44 4.9 91.8 1.0

Zinc binding site 3 out of 3 in the Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn303 b:105.3 occ:1.00 OD2 R:ASP97 1.7 89.9 1.0 O R:CYS75 1.8 89.4 1.0 ND1 R:HIS77 1.9 88.1 1.0 CE1 R:HIS77 2.7 88.1 1.0 HE1 R:HIS77 2.8 88.1 1.0 CG R:ASP97 2.8 89.9 1.0 C R:CYS75 2.9 89.4 1.0 HB2 R:CYS75 2.9 89.4 1.0 CG R:HIS77 3.1 88.1 1.0 HB2 R:HIS77 3.4 88.1 1.0 HB3 R:ASP97 3.5 89.9 1.0 OD1 R:ASP97 3.6 89.9 1.0 CA R:CYS75 3.7 89.4 1.0 CB R:CYS75 3.7 89.4 1.0 HA R:CYS75 3.7 89.4 1.0 CB R:ASP97 3.8 89.9 1.0 CB R:HIS77 3.8 88.1 1.0 NE2 R:HIS77 3.9 88.1 1.0 N R:ASN76 3.9 85.7 1.0 N R:HIS77 4.0 88.1 1.0 HB3 R:ASN76 4.0 85.7 1.0 C R:ASN76 4.0 85.7 1.0 CD2 R:HIS77 4.1 88.1 1.0 H R:HIS77 4.1 88.1 1.0 HB2 R:ASP97 4.2 89.9 1.0 HD2 R:ARG99 4.3 90.1 1.0 CA R:ASN76 4.3 85.7 1.0 O R:ASN76 4.4 85.7 1.0 CA R:HIS77 4.5 88.1 1.0 SG R:CYS75 4.5 89.4 1.0 HB3 R:CYS75 4.6 89.4 1.0 HB2 R:ARG99 4.6 90.1 1.0 HG R:CYS75 4.7 89.4 1.0 CB R:ASN76 4.7 85.7 1.0 HB3 R:HIS77 4.7 88.1 1.0 HE2 R:HIS77 4.7 88.1 1.0 H R:ASN76 4.8 85.7 1.0 HA R:HIS77 5.0 88.1 1.0

A.Ciulli, C.Crowe, M.A.Nakasone. Open Non-Crosslinked Structure BRD4BD2-MZ1-(NEDD8)-CRL2VHL To Be Published.