Zinc in PDB 7vzg: Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)

The structure of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) also contains other interesting chemical elements:

Iron	(Fe)	14 atoms
Calcium	(Ca)	2 atoms
Magnesium	(Mg)	26 atoms

The binding sites of Zinc atom in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) (pdb code 7vzg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form), PDB code: 7vzg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:20.0 occ:1.00 ZN A:2GO901 0.0 20.0 1.0 ND A:2GO901 2.1 20.0 1.0 NB A:2GO901 2.1 20.0 1.0 NA A:2GO901 2.2 20.0 1.0 NC A:2GO901 2.2 20.0 1.0 NE2 A:HIS784 2.4 4.0 1.0 C4D A:2GO901 2.8 20.0 1.0 C1B A:2GO901 3.0 20.0 1.0 C4A A:2GO901 3.1 20.0 1.0 C1D A:2GO901 3.1 20.0 1.0 CE1 A:HIS784 3.1 4.0 1.0 C1A A:2GO901 3.1 20.0 1.0 C1C A:2GO901 3.1 20.0 1.0 C4B A:2GO901 3.1 20.0 1.0 C4C A:2GO901 3.2 20.0 1.0 OBB a:2GO903 3.2 20.0 1.0 CHB A:2GO901 3.3 20.0 1.0 CHA A:2GO901 3.4 20.0 1.0 CHC A:2GO901 3.5 20.0 1.0 CHD A:2GO901 3.5 20.0 1.0 CD2 A:HIS784 3.6 4.0 1.0 CAB a:2GO903 3.8 20.0 1.0 C3D A:2GO901 4.0 20.0 1.0 C2D A:2GO901 4.1 20.0 1.0 C2B A:2GO901 4.1 20.0 1.0 C3B a:2GO903 4.2 20.0 1.0 C3B A:2GO901 4.2 20.0 1.0 ND1 A:HIS784 4.3 4.0 1.0 C3A A:2GO901 4.3 20.0 1.0 C2A A:2GO901 4.4 20.0 1.0 C2C A:2GO901 4.4 20.0 1.0 C3C A:2GO901 4.4 20.0 1.0 C4B a:2GO903 4.5 20.0 1.0 CG A:HIS784 4.5 4.0 1.0 CMA A:2GO901 4.7 20.0 1.0 CBB a:2GO903 4.7 20.0 1.0 CBD A:2GO901 4.8 20.0 1.0 C2B a:2GO903 4.8 20.0 1.0 CD1 A:LEU852 4.8 4.0 1.0 CHC a:2GO903 5.0 20.0 1.0

Zinc binding site 2 out of 2 in the Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C (the Larger Form) within 5.0Å range: probe atom residue distance (Å) B Occ a:Zn903 b:20.0 occ:1.00 ZN a:2GO903 0.0 20.0 1.0 NB a:2GO903 2.0 20.0 1.0 ND a:2GO903 2.1 20.0 1.0 NA a:2GO903 2.1 20.0 1.0 NC a:2GO903 2.2 20.0 1.0 NE2 a:HIS784 2.4 4.0 1.0 C4D a:2GO903 2.8 20.0 1.0 C1B a:2GO903 3.0 20.0 1.0 C4A a:2GO903 3.0 20.0 1.0 C1A a:2GO903 3.0 20.0 1.0 C1D a:2GO903 3.1 20.0 1.0 C4B a:2GO903 3.2 20.0 1.0 C4C a:2GO903 3.2 20.0 1.0 C1C a:2GO903 3.2 20.0 1.0 CE1 a:HIS784 3.2 4.0 1.0 OBB A:2GO901 3.3 20.0 1.0 CHA a:2GO903 3.3 20.0 1.0 CHB a:2GO903 3.3 20.0 1.0 CD2 a:HIS784 3.4 4.0 1.0 CHD a:2GO903 3.4 20.0 1.0 CHC a:2GO903 3.6 20.0 1.0 CAB A:2GO901 3.8 20.0 1.0 C3D a:2GO903 4.0 20.0 1.0 C3B A:2GO901 4.1 20.0 1.0 C2B a:2GO903 4.1 20.0 1.0 C2D a:2GO903 4.1 20.0 1.0 C3B a:2GO903 4.2 20.0 1.0 C3A a:2GO903 4.2 20.0 1.0 ND1 a:HIS784 4.3 4.0 1.0 C2A a:2GO903 4.3 20.0 1.0 C4B A:2GO901 4.4 20.0 1.0 CG a:HIS784 4.4 4.0 1.0 C2C a:2GO903 4.5 20.0 1.0 C3C a:2GO903 4.6 20.0 1.0 CMA a:2GO903 4.7 20.0 1.0 CBB A:2GO901 4.7 20.0 1.0 C2B A:2GO901 4.7 20.0 1.0 CBD a:2GO903 4.8 20.0 1.0 CHC A:2GO901 4.8 20.0 1.0 CD1 a:LEU852 4.8 4.0 1.0 CAD a:2GO903 5.0 20.0 1.0

S.Dong, G.Huang, C.Wang, J.Wang, S.F.Sui, X.Qin. Structure of the Acidobacteria Homodimeric Reaction Center Bound with Cytochrome C. Nat Commun V. 13 7745 2022.
ISSN: ESSN 2041-1723
PubMed: 36517472
DOI: 10.1038/S41467-022-35460-6