Zinc in PDB 7jj9: Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae

The structure of Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae, PDB code: 7jj9 was solved by Z.Luo, J.R.More, B.Kobe, C.A.Mcdevitt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.83 / 1.58
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.109, 44.362, 92.627, 90.00, 106.83, 90.00
R / Rfree (%)	16.4 / 19.8

The structure of Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae (pdb code 7jj9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae, PDB code: 7jj9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:9.0 occ:0.99 OE2 A:GLU279 2.0 8.8 1.0 NE2 A:HIS63 2.0 7.7 1.0 NE2 A:HIS140 2.0 8.1 1.0 NE2 A:HIS204 2.1 10.4 1.0 CD A:GLU279 2.8 7.8 1.0 CE1 A:HIS204 2.9 19.3 1.0 HE1 A:HIS204 3.0 23.2 1.0 CE1 A:HIS63 3.0 10.3 1.0 OE1 A:GLU279 3.0 9.9 1.0 CD2 A:HIS63 3.0 9.3 1.0 CE1 A:HIS140 3.0 11.6 1.0 CD2 A:HIS140 3.0 7.8 1.0 HE1 A:HIS63 3.2 12.4 1.0 CD2 A:HIS204 3.2 16.1 1.0 HD2 A:HIS140 3.2 9.3 1.0 HD2 A:HIS63 3.2 11.2 1.0 HE1 A:HIS140 3.2 13.9 1.0 HD2 A:HIS204 3.5 19.2 1.0 HB2 A:ALA206 3.6 13.7 1.0 HE1 A:MET88 4.0 12.9 1.0 ND1 A:HIS204 4.1 20.4 1.0 ND1 A:HIS63 4.1 11.3 1.0 HB2 A:PRO277 4.1 10.4 1.0 ND1 A:HIS140 4.1 8.3 1.0 CG A:HIS63 4.1 9.7 1.0 CG A:HIS140 4.2 7.5 1.0 CG A:GLU279 4.2 8.4 1.0 CG A:HIS204 4.3 13.4 1.0 HH2 A:TRP142 4.4 10.2 1.0 HG2 A:GLU279 4.4 10.1 1.0 CB A:ALA206 4.5 11.4 1.0 HG3 A:GLU279 4.5 10.1 1.0 HZ2 A:TRP142 4.5 10.8 1.0 HB1 A:ALA206 4.5 13.7 1.0 HB3 A:PRO277 4.6 10.4 1.0 HG3 A:PRO277 4.7 10.9 1.0 CB A:PRO277 4.7 8.7 1.0 CE A:MET88 4.8 10.7 1.0 HA A:ALA206 4.8 11.4 1.0 HD1 A:HIS204 4.8 24.5 1.0 HD1 A:HIS63 4.9 13.5 1.0 HD1 A:HIS140 4.9 9.9 1.0 SD A:MET88 4.9 10.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Zn(II)-Bound Adca From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:12.8 occ:0.84 NE2 A:HIS463 2.0 14.8 1.0 NE2 A:HIS452 2.0 15.6 1.0 NE2 A:HIS461 2.1 15.0 1.0 CL A:CL603 2.2 17.8 0.8 CE1 A:HIS463 2.9 13.4 1.0 CD2 A:HIS452 2.9 17.9 1.0 CE1 A:HIS452 3.0 22.2 1.0 CD2 A:HIS463 3.0 15.9 1.0 CE1 A:HIS461 3.0 14.5 1.0 HE1 A:HIS463 3.1 16.1 1.0 HD2 A:HIS452 3.1 21.4 1.0 CD2 A:HIS461 3.1 15.4 1.0 HE1 A:HIS461 3.2 17.4 1.0 HE1 A:HIS452 3.2 26.6 1.0 HD2 A:HIS463 3.3 19.1 1.0 HD2 A:HIS461 3.4 18.5 1.0 O A:HOH829 3.8 20.5 1.0 ND1 A:HIS463 4.0 13.6 1.0 CG A:HIS452 4.1 18.2 1.0 ND1 A:HIS452 4.1 20.1 1.0 CG A:HIS463 4.1 11.5 1.0 ND1 A:HIS461 4.2 14.0 1.0 CG A:HIS461 4.3 12.8 1.0 O A:HOH795 4.6 17.1 1.0 HA A:ASP451 4.7 18.1 1.0 HD1 A:HIS463 4.8 16.3 1.0 HD1 A:HIS452 4.9 24.1 1.0 O A:HOH1161 4.9 33.6 1.0 HD1 A:HIS461 4.9 16.8 1.0

Z.Luo, J.R.Morey, E.Deplazes, V.G.Pederick, A.Motygullina, S.L.Begg, N.Eleftheriadis, M.Isselstein, J.C.Paton, T.Cordes, J.Harmer, B.Kobe, C.A.Mcdevitt. The Molecular Basis of Zinc Acquisition By Streptococcus Pneumoniae Adca To Be Published.